• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

多底物特异性以及tRNA编辑和甲基化酶相互依赖的进化基础。

Multi-Substrate Specificity and the Evolutionary Basis for Interdependence in tRNA Editing and Methylation Enzymes.

作者信息

Dixit Sameer, Henderson Jeremy C, Alfonzo Juan D

机构信息

Department of Microbiology, The Ohio State Biochemistry Program, The Center for RNA Biology, The Ohio State University, Columbus, OH, United States.

出版信息

Front Genet. 2019 Feb 14;10:104. doi: 10.3389/fgene.2019.00104. eCollection 2019.

DOI:10.3389/fgene.2019.00104
PMID:30838029
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC6382703/
Abstract

Among tRNA modification enzymes there is a correlation between specificity for multiple tRNA substrates and heteromultimerization. In general, enzymes that modify a conserved residue in different tRNA sequences adopt a heterodimeric structure. Presumably, such changes in the oligomeric state of enzymes, to gain multi-substrate recognition, are driven by the need to accommodate and catalyze a particular reaction in different substrates while maintaining high specificity. This review focuses on two classes of enzymes where the case for multimerization as a way to diversify molecular recognition can be made. We will highlight several new themes with tRNA methyltransferases and will also discuss recent findings with tRNA editing deaminases. These topics will be discussed in the context of several mechanisms by which heterodimerization may have been achieved during evolution and how these mechanisms might impact modifications in different systems.

摘要

在tRNA修饰酶中,对多种tRNA底物的特异性与异源多聚化之间存在相关性。一般来说,修饰不同tRNA序列中保守残基的酶采用异二聚体结构。据推测,酶的寡聚状态发生这种变化以获得多底物识别能力,是由在维持高特异性的同时适应和催化不同底物中的特定反应的需求驱动的。本综述重点关注两类酶,在这两类酶中,可以证明多聚化是使分子识别多样化的一种方式。我们将强调tRNA甲基转移酶的几个新主题,也将讨论tRNA编辑脱氨酶的最新发现。这些主题将在几个机制的背景下进行讨论,在进化过程中可能是通过这些机制实现异源二聚化的,以及这些机制如何影响不同系统中的修饰。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3e12/6382703/c054be4996cc/fgene-10-00104-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3e12/6382703/a8a98160bb2f/fgene-10-00104-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3e12/6382703/374b1cae39a4/fgene-10-00104-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3e12/6382703/c0d3bae8105f/fgene-10-00104-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3e12/6382703/c054be4996cc/fgene-10-00104-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3e12/6382703/a8a98160bb2f/fgene-10-00104-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3e12/6382703/374b1cae39a4/fgene-10-00104-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3e12/6382703/c0d3bae8105f/fgene-10-00104-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3e12/6382703/c054be4996cc/fgene-10-00104-g004.jpg

相似文献

1
Multi-Substrate Specificity and the Evolutionary Basis for Interdependence in tRNA Editing and Methylation Enzymes.多底物特异性以及tRNA编辑和甲基化酶相互依赖的进化基础。
Front Genet. 2019 Feb 14;10:104. doi: 10.3389/fgene.2019.00104. eCollection 2019.
2
The Evolution of Substrate Specificity by tRNA Modification Enzymes.tRNA修饰酶介导的底物特异性的进化
Enzymes. 2017;41:51-88. doi: 10.1016/bs.enz.2017.03.002. Epub 2017 Apr 26.
3
Enzymatic conversion of adenosine to inosine and to N1-methylinosine in transfer RNAs: a review.转运核糖核酸中腺苷向肌苷及N1-甲基肌苷的酶促转化:综述
Biochimie. 1996;78(6):488-501. doi: 10.1016/0300-9084(96)84755-9.
4
Biochemical and structural studies of A-to-I editing by tRNA:A34 deaminases at the wobble position of transfer RNA.转运RNA摆动位置上的tRNA:A34脱氨酶对A到I编辑的生化与结构研究。
Biochemistry. 2005 Sep 13;44(36):12057-65. doi: 10.1021/bi050499f.
5
The C-terminal end of the Trypanosoma brucei editing deaminase plays a critical role in tRNA binding.布氏锥虫编辑脱氨酶的 C 末端在 tRNA 结合中起着关键作用。
RNA. 2011 Jul;17(7):1296-306. doi: 10.1261/rna.2748211. Epub 2011 May 20.
6
A-to-I editing on tRNAs: biochemical, biological and evolutionary implications.tRNA 的 A-to-I 编辑:生化、生物学和进化意义。
FEBS Lett. 2014 Nov 28;588(23):4279-86. doi: 10.1016/j.febslet.2014.09.025. Epub 2014 Sep 27.
7
Identification of enzymes for adenosine-to-inosine editing and discovery of cytidine-to-uridine editing in nucleus-encoded transfer RNAs of Arabidopsis.拟南芥细胞核编码转运RNA中腺苷到肌苷编辑酶的鉴定及胞苷到尿苷编辑的发现。
Plant Physiol. 2014 Dec;166(4):1985-97. doi: 10.1104/pp.114.250498. Epub 2014 Oct 14.
8
Diversity in mechanism and function of tRNA methyltransferases.转运RNA甲基转移酶的机制与功能多样性
RNA Biol. 2015;12(4):398-411. doi: 10.1080/15476286.2015.1008358.
9
Unexpected expansion of tRNA substrate recognition by the yeast m1G9 methyltransferase Trm10.酵母 m1G9 甲基转移酶 Trm10 对 tRNA 底物识别的意外扩展。
RNA. 2013 Aug;19(8):1137-46. doi: 10.1261/rna.039651.113. Epub 2013 Jun 21.
10
A semi-quantitative pull-down assay to study tRNA substrate specificity of modification enzymes.一种用于研究修饰酶的tRNA底物特异性的半定量下拉分析方法。
Methods Enzymol. 2021;658:359-377. doi: 10.1016/bs.mie.2021.06.010. Epub 2021 Jul 14.

引用本文的文献

1
A-to-I mRNA editing recodes hundreds of genes in dozens of species and produces endogenous protein isoforms in bacteria.A到I的信使核糖核酸编辑在数十个物种中对数百个基因进行重新编码,并在细菌中产生内源性蛋白质异构体。
Nucleic Acids Res. 2025 Jul 8;53(13). doi: 10.1093/nar/gkaf656.
2
Adenosine-to-inosine RNA editing in cancer: molecular mechanisms and downstream targets.癌症中的腺苷到次黄嘌呤RNA编辑:分子机制及下游靶点
Protein Cell. 2025 Jun 20;16(6):391-417. doi: 10.1093/procel/pwae039.
3
ADATs: roles in tRNA editing and relevance to disease.腺苷脱氨酶作用于RNA(ADATs):在tRNA编辑中的作用及其与疾病的关联

本文引用的文献

1
A rationale for tRNA modification circuits in the anticodon loop.反密码子环中 tRNA 修饰回路的基本原理。
RNA. 2018 Oct;24(10):1277-1284. doi: 10.1261/rna.067736.118. Epub 2018 Jul 19.
2
Evolutionary insights into Trm112-methyltransferase holoenzymes involved in translation between archaea and eukaryotes.在古菌和真核生物之间的翻译中涉及的 Trm112-甲基转移酶全酶的进化见解。
Nucleic Acids Res. 2018 Sep 19;46(16):8483-8499. doi: 10.1093/nar/gky638.
3
Lack of 2'-O-methylation in the tRNA anticodon loop of two phylogenetically distant yeast species activates the general amino acid control pathway.
Acta Biochim Biophys Sin (Shanghai). 2024 Jul 22;57(1):73-83. doi: 10.3724/abbs.2024125.
4
Transfer RNA Modification Enzymes with a Thiouridine Synthetase, Methyltransferase and Pseudouridine Synthase (THUMP) Domain and the Nucleosides They Produce in tRNA.具有硫代尿苷合成酶、甲基转移酶和假尿苷合酶(THUMP)结构域的转移 RNA 修饰酶及其在 tRNA 中产生的核苷。
Genes (Basel). 2023 Jan 31;14(2):382. doi: 10.3390/genes14020382.
5
Sequential action of a tRNA base editor in conversion of cytidine to pseudouridine.tRNA 碱基编辑器连续作用将胞嘧啶转化为假尿嘧啶。
Nat Commun. 2022 Oct 11;13(1):5994. doi: 10.1038/s41467-022-33714-x.
6
Inosine in Biology and Disease.肌苷在生物学和疾病中的作用
Genes (Basel). 2021 Apr 19;12(4):600. doi: 10.3390/genes12040600.
7
The occurrence order and cross-talk of different tRNA modifications.不同 tRNA 修饰的发生顺序和串扰。
Sci China Life Sci. 2021 Sep;64(9):1423-1436. doi: 10.1007/s11427-020-1906-4. Epub 2021 Apr 19.
8
Post-Transcriptional Modifications of Conserved Nucleotides in the T-Loop of tRNA: A Tale of Functional Convergent Evolution.tRNA T 环中保守核苷酸的转录后修饰:功能趋同进化的故事
Genes (Basel). 2021 Jan 22;12(2):140. doi: 10.3390/genes12020140.
9
Intellectual disability-associated gene ftsj1 is responsible for 2'-O-methylation of specific tRNAs.智力残疾相关基因 ftsj1 负责特定 tRNA 的 2'-O-甲基化。
EMBO Rep. 2020 Aug 5;21(8):e50095. doi: 10.15252/embr.202050095. Epub 2020 Jun 18.
10
Comparative tRNA sequencing and RNA mass spectrometry for surveying tRNA modifications.比较 tRNA 测序和 RNA 质谱法用于调查 tRNA 修饰。
Nat Chem Biol. 2020 Sep;16(9):964-972. doi: 10.1038/s41589-020-0558-1. Epub 2020 Jun 8.
两种亲缘关系较远的酵母中 tRNA 反密码环 2′-O-甲基化缺失激活了一般氨基酸控制途径。
PLoS Genet. 2018 Mar 29;14(3):e1007288. doi: 10.1371/journal.pgen.1007288. eCollection 2018 Mar.
4
Evolution of Eukaryal and Archaeal Pseudouridine Synthase Pus10.真核生物和古菌假尿嘧啶核苷合成酶 Pus10 的进化。
J Mol Evol. 2018 Jan;86(1):77-89. doi: 10.1007/s00239-018-9827-y. Epub 2018 Jan 18.
5
Cooperativity between different tRNA modifications and their modification pathways.不同 tRNA 修饰之间的协同作用及其修饰途径。
Biochim Biophys Acta Gene Regul Mech. 2018 Apr;1861(4):409-418. doi: 10.1016/j.bbagrm.2017.12.003. Epub 2017 Dec 5.
6
The m1A landscape on cytosolic and mitochondrial mRNA at single-base resolution.单碱基分辨率下细胞质和线粒体 mRNA 上的 m1A 图谱。
Nature. 2017 Nov 9;551(7679):251-255. doi: 10.1038/nature24456. Epub 2017 Oct 25.
7
Binding synergy as an essential step for tRNA editing and modification enzyme codependence in .结合协同作用是……中tRNA编辑和修饰酶相互依赖的关键步骤。 (原句不完整,翻译可能存在一定局限性)
RNA. 2018 Jan;24(1):56-66. doi: 10.1261/rna.062893.117. Epub 2017 Oct 17.
8
The chemistries and consequences of DNA and RNA methylation and demethylation.DNA 和 RNA 甲基化与去甲基化的化学性质及其后果。
RNA Biol. 2017 Sep 2;14(9):1099-1107. doi: 10.1080/15476286.2017.1318241. Epub 2017 Apr 25.
9
A to I editing in disease is not fake news.疾病中的 A 至 I 编辑不是假新闻。
RNA Biol. 2017 Sep 2;14(9):1223-1231. doi: 10.1080/15476286.2017.1306173. Epub 2017 Mar 27.
10
Trm5 and TrmD: Two Enzymes from Distinct Origins Catalyze the Identical tRNA Modification, m¹G37.Trm5和TrmD:两种起源不同的酶催化相同的tRNA修饰,即m¹G37。
Biomolecules. 2017 Mar 21;7(1):32. doi: 10.3390/biom7010032.