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全外显子测序分析中国人乳腺纤维腺瘤的基因组突变谱。

The genomic mutation spectrums of breast fibroadenomas in Chinese population by whole exome sequencing analysis.

机构信息

Department of Breast Surgery, Zhejiang Hospital, Hangzhou, P.R. China.

Division of Molecular Genetics, Joingenome Diagnostics, Hangzhou, P.R. China.

出版信息

Cancer Med. 2019 May;8(5):2372-2379. doi: 10.1002/cam4.2081. Epub 2019 Mar 9.

Abstract

Fibroadenomas (FAs) are the most common fibroepithelial lesions and the most common benign tumors of the breast in women of reproductive age. Although MED12 mutations, an overwhelming majority of all mutations, and some other gene mutations have been found in FAs, the genomic landscapes of FAs are still not completely clear and the genomic mutation spectrums of FAs in Chinese population remains unknown. Here, by performing whole exome sequencing of 12 FAs and the corresponding normal breast tissues in Chinese Han population, we observed the somatic and germline landscapes of genetic alterations. We identified 16 recurrently mutated genes with 37 nonsynonymous or frameshift somatic mutations and 27 recurrent somatic copy number variants (CNVs). In these mutated genes, MED12 was the most common in FAs, harboring 6 nonsynonymous/frameshift somatic mutations and 1 CNV. In addition, 6 germline mutations of tumor susceptibility genes in 5 FAs were identified and the tumor mutational burden of the 5 FAs was significantly higher than the other 7 FAs without germline mutations. This study provides genomic mutation spectrums of FAs in Chinese population and expand the genetic spectrum of FAs.

摘要

纤维腺瘤(FAs)是最常见的乳腺纤维上皮性病变和育龄期妇女最常见的良性肿瘤。尽管在 FAs 中发现了绝大多数的 MED12 突变和一些其他基因突变,但 FAs 的基因组景观仍不完全清楚,中国人群 FAs 的基因组突变谱尚不清楚。在这里,我们通过对中国汉族人群的 12 例 FAs 及其相应的正常乳腺组织进行全外显子组测序,观察了遗传改变的体细胞和种系景观。我们鉴定出 16 个高频突变基因,这些基因共存在 37 个非同义或移码体细胞突变和 27 个高频体细胞拷贝数变异(CNVs)。在这些突变基因中,MED12 是 FAs 中最常见的基因,携带 6 个非同义/移码体细胞突变和 1 个 CNV。此外,在 5 例 FAs 中鉴定出 6 个肿瘤易感性基因的种系突变,这 5 例 FAs 的肿瘤突变负担明显高于其他 7 例没有种系突变的 FAs。本研究提供了中国人群 FAs 的基因组突变谱,并扩展了 FAs 的遗传谱。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/94a3/6536971/ee093f0e39ef/CAM4-8-2372-g001.jpg

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