Hanson China A, Müller Albert L, Loy Alexander, Dona Clelia, Appel Ramona, Jørgensen Bo Barker, Hubert Casey R J
School of Civil Engineering and Geosciences, Newcastle University, Newcastle upon Tyne, United Kingdom.
Division of Microbial Ecology, Department of Microbiology and Ecosystem Science, University of Vienna, Vienna, Austria.
Front Microbiol. 2019 Feb 28;10:245. doi: 10.3389/fmicb.2019.00245. eCollection 2019.
Selection by the local, contemporary environment plays a prominent role in shaping the biogeography of microbes. However, the importance of historical factors in microbial biogeography is more debatable. Historical factors include past ecological and evolutionary circumstances that may have influenced present-day microbial diversity, such as dispersal and past environmental conditions. Diverse thermophilic sulfate-reducing are present as dormant endospores in marine sediments worldwide where temperatures are too low to support their growth. Therefore, they are dispersed to here from elsewhere, presumably a hot, anoxic habitat. While dispersal through ocean currents must influence their distribution in cold marine sediments, it is not clear whether even earlier historical factors, related to the source habitat where these organisms were once active, also have an effect. We investigated whether these historical factors may have influenced the diversity and distribution of thermophilic endospores by comparing their diversity in 10 Arctic fjord surface sediments. Although community composition varied spatially, clear biogeographic patterns were only evident at a high level of taxonomic resolution (>97% sequence similarity of the 16S rRNA gene) achieved with oligotyping. In particular, the diversity and distribution of oligotypes differed for the two most prominent OTUs (defined using a standard 97% similarity cutoff). One OTU was dominated by a single ubiquitous oligotype, while the other OTU consisted of ten more spatially localized oligotypes that decreased in compositional similarity with geographic distance. These patterns are consistent with differences in historical factors that occurred when and where the taxa were once active, prior to sporulation. Further, the influence of history on biogeographic patterns was only revealed by analyzing microdiversity within OTUs, suggesting that populations within standard OTU-level groupings do not necessarily share a common ecological and evolutionary history.
当地的当代环境选择在塑造微生物生物地理学方面发挥着重要作用。然而,历史因素在微生物生物地理学中的重要性更具争议性。历史因素包括过去可能影响当今微生物多样性的生态和进化环境,如扩散和过去的环境条件。世界各地的海洋沉积物中都存在多种嗜热硫酸盐还原菌,它们以休眠内生孢子的形式存在,而这些沉积物的温度过低,无法支持它们生长。因此,它们是从其他地方扩散到这里的,大概是一个炎热、缺氧的栖息地。虽然通过洋流扩散必然会影响它们在寒冷海洋沉积物中的分布,但尚不清楚与这些生物曾经活跃的源栖息地相关的更早的历史因素是否也有影响。我们通过比较10个北极峡湾表层沉积物中嗜热内生孢子的多样性,研究了这些历史因素是否可能影响嗜热内生孢子的多样性和分布。尽管群落组成在空间上有所不同,但只有在通过寡核苷酸分型实现的高分类分辨率(16S rRNA基因序列相似度>97%)水平上,清晰的生物地理模式才明显可见。特别是,对于两个最突出的操作分类单元(使用标准的97%相似度阈值定义),寡核苷酸型的多样性和分布有所不同。一个操作分类单元由单一的普遍存在的寡核苷酸型主导,而另一个操作分类单元由十个更多的空间局部化寡核苷酸型组成,其组成相似度随地理距离而降低。这些模式与在孢子形成之前,这些分类群曾经活跃的时间和地点所发生的历史因素差异一致。此外,只有通过分析操作分类单元内的微多样性,才揭示了历史对生物地理模式的影响,这表明标准操作分类单元水平分组内的种群不一定共享共同的生态和进化历史。