Zhao Jiangtao, Zhang Zheng, Tian Changyu, Chen Xiao, Hu Lingfei, Wei Xiao, Li Huan, Lin Weishi, Jiang Aimin, Feng Ruo, Yuan Jing, Yin Zhe, Zhao Xiangna
Department of Histology and Embryology, School of Basic Medical Sciences, Zhengzhou University, Zhengzhou, China.
College of Food Science, South China Agricultural University, Guangzhou, China.
Front Microbiol. 2019 Mar 5;10:420. doi: 10.3389/fmicb.2019.00420. eCollection 2019.
Carbapenem-resistant strains are a major clinical problem because of the lack of effective alternative antibiotics. However, viruses that lyze bacteria, called bacteriophages, have potential therapeutic applications in the control of antibiotic-resistant bacteria. In the present study, a lytic bacteriophage specific for isolates, designated vB_EaeM_φEap-3, was characterized. Based on transmission electron microscopy analysis, phage vB_EaeM_φEap-3 was classified as a member of the family (order, ). Host range determination revealed that vB_EaeM_φEap-3 lyzed 18 of the 28 strains tested, while a one-step growth curve showed a short latent period and a moderate burst size. The stability of vB_EaeM_φEap-3 at various temperatures and pH levels was also examined. Genomic sequencing and bioinformatics analysis revealed that vB_EaeM_φEap-3 has a 175,814-bp double-stranded DNA genome that does not contain any genes considered undesirable for the development of therapeutics (e.g., antibiotic resistance genes, toxin-encoding genes, integrase). The phage genome contained 278 putative protein-coding genes and one tRNA gene, tRNA-Met (AUG). Phylogenetic analysis based on large terminase subunit and major capsid protein sequences suggested that vB_EaeM_φEap-3 belongs to novel genus "Kp15 virus" within the T4-like virus subfamily. Based on host range, genomic, and physiological parameters, we propose that phage vB_EaeM_φEap-3 is a suitable candidate for phage therapy applications.
耐碳青霉烯类菌株是一个主要的临床问题,因为缺乏有效的替代抗生素。然而,能够裂解细菌的病毒,即噬菌体,在控制抗生素耐药菌方面具有潜在的治疗应用价值。在本研究中,对一种针对分离株的裂解性噬菌体进行了特性分析,该噬菌体被命名为vB_EaeM_φEap-3。基于透射电子显微镜分析,噬菌体vB_EaeM_φEap-3被归类为(目,)科的一员。宿主范围测定显示,vB_EaeM_φEap-3可裂解所测试的28株菌株中的18株,而一步生长曲线显示其潜伏期短且裂解量适中。还检测了vB_EaeM_φEap-3在不同温度和pH水平下的稳定性。基因组测序和生物信息学分析表明,vB_EaeM_φEap-3具有一个175,814碱基对的双链DNA基因组,其中不包含任何被认为不利于治疗开发的基因(如抗生素耐药基因、毒素编码基因、整合酶)。噬菌体基因组包含278个推定的蛋白质编码基因和一个tRNA基因,即tRNA-Met(AUG)。基于大末端酶亚基和主要衣壳蛋白序列的系统发育分析表明,vB_EaeM_φEap-3属于T4样病毒亚科内的新属“Kp15病毒”。基于宿主范围、基因组和生理参数,我们认为噬菌体vB_EaeM_φEap-3是噬菌体治疗应用的合适候选者。