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Identification of an eight-gene signature for survival prediction for patients with hepatocellular carcinoma based on integrated bioinformatics analysis.

作者信息

Qiao Guo-Jie, Chen Liang, Wu Jin-Cai, Li Zhou-Ri

机构信息

Institute of Tropical Agriculture and Forestry, Hainan University, Hainkou, China.

Department of Hepatobiliary Surgery, Hainan Provincial People's Hospital, Hainan Medical College, Hainkou, China.

出版信息

PeerJ. 2019 Mar 20;7:e6548. doi: 10.7717/peerj.6548. eCollection 2019.


DOI:10.7717/peerj.6548
PMID:30918751
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC6431139/
Abstract

BACKGROUND: Hepatocellular carcinoma (HCC) remains one of the leading causes of cancer-related death worldwide. Despite recent advances in imaging techniques and therapeutic intervention for HCC, the low overall 5-year survival rate of HCC patients remains unsatisfactory. This study aims to find a gene signature to predict clinical outcomes in HCC. METHODS: Bioinformatics analysis including Cox's regression analysis, Kaplan-Meier (KM) and receiver operating characteristic curve (ROC) analysis and the random survival forest algorithm were performed to mine the expression profiles of 553 hepatocellular carcinoma (HCC) patients from The Cancer Genome Atlas (TCGA) and Gene Expression Omnibus (GEO) public database. RESULTS: We selected a signature comprising eight protein-coding genes (DCAF13, FAM163A, GPR18, LRP10, PVRIG, S100A9, SGCB, and TNNI3K) in the training dataset (AUC = 0.77 at five years,  = 332). The signature stratified patients into high- and low-risk groups with significantly different survival in the training dataset (median 2.20 vs. 8.93 years, log-rank test < 0.001) and in the test dataset (median 2.68 vs. 4.24 years, log-rank test  = 0.004,  = 221, GSE14520). Further multivariate Cox regression analysis showed that the signature was an independent prognostic factor for patients with HCC. Compared with TNM stage and another reported three-gene model, the signature displayed improved survival prediction power in entire dataset (AUC signature = 0.66 vs. AUC TNM = 0.64 vs. AUC gene model = 0.60,  = 553). Stratification analysis shows that it can be used as an auxiliary marker for many traditional staging models. CONCLUSIONS: We constructed an eight-gene signature that can be a novel prognostic marker to predict the survival of HCC patients.

摘要
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1099/6431139/160a38dbf822/peerj-07-6548-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1099/6431139/5808780ed1ed/peerj-07-6548-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1099/6431139/9d76a863a9ad/peerj-07-6548-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1099/6431139/38c082e95d3e/peerj-07-6548-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1099/6431139/e7e2e8143214/peerj-07-6548-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1099/6431139/6ccbdce6ec36/peerj-07-6548-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1099/6431139/160a38dbf822/peerj-07-6548-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1099/6431139/5808780ed1ed/peerj-07-6548-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1099/6431139/9d76a863a9ad/peerj-07-6548-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1099/6431139/38c082e95d3e/peerj-07-6548-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1099/6431139/e7e2e8143214/peerj-07-6548-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1099/6431139/6ccbdce6ec36/peerj-07-6548-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1099/6431139/160a38dbf822/peerj-07-6548-g006.jpg

相似文献

[1]
Identification of an eight-gene signature for survival prediction for patients with hepatocellular carcinoma based on integrated bioinformatics analysis.

PeerJ. 2019-3-20

[2]
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J Cell Physiol. 2018-11-27

[3]
Identification of a six-gene signature predicting overall survival for hepatocellular carcinoma.

Cancer Cell Int. 2019-5-21

[4]
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[5]
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J Transl Med. 2018-12-20

[6]
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Int Immunopharmacol. 2021-1

[7]
Construction and Validation of a Prognostic Gene-Based Model for Overall Survival Prediction in Hepatocellular Carcinoma Using an Integrated Statistical and Bioinformatic Approach.

Int J Mol Sci. 2021-2-5

[8]
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PeerJ. 2020-5-26

[9]
Identification of a Liver Progenitor Cell-Related Genes Signature Predicting Overall Survival for Hepatocellular Carcinoma.

Technol Cancer Res Treat. 2021

[10]
Identification of Potential Prognostic Long Non-Coding RNA Biomarkers for Predicting Survival in Patients with Hepatocellular Carcinoma.

Cell Physiol Biochem. 2018

引用本文的文献

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Acta Physiol (Oxf). 2025-4

[2]
GPCRs: emerging targets for novel T cell immune checkpoint therapy.

Cancer Immunol Immunother. 2024-10-3

[3]
The cell death-related genes machine learning model for precise therapy and clinical drug selection in hepatocellular carcinoma.

J Cell Mol Med. 2024-4

[4]
Development and validation of a nomogram for survival prediction in hepatocellular carcinoma after partial hepatectomy.

BMC Surg. 2023-1-30

[5]
PVRIG Expression Is an Independent Prognostic Factor and a New Potential Target for Immunotherapy in Hepatocellular Carcinoma.

Cancers (Basel). 2023-1-10

[6]
A Novel mRNA Signature Related to Immunity to Predict Survival and Immunotherapy Response in Hepatocellular Carcinoma.

J Clin Transl Hepatol. 2022-10-28

[7]
A novel pyroptosis-regulated gene signature for predicting prognosis and immunotherapy response in hepatocellular carcinoma.

Front Mol Biosci. 2022-9-5

[8]
DCAF-13 is required for growth, development, and fertility.

MicroPubl Biol. 2022-9-23

[9]
Histone methylation modification patterns and relevant M-RiskScore in acute myeloid leukemia.

Heliyon. 2022-9-16

[10]
Gene signature to predict prognostic survival of hepatocellular carcinoma.

Open Med (Wars). 2022-1-7

本文引用的文献

[1]
Calprotectin (S100A8/S100A9): a key protein between inflammation and cancer.

Inflamm Res. 2018-8-6

[2]
The Identification of Core Gene Expression Signature in Hepatocellular Carcinoma.

Oxid Med Cell Longev. 2018-5-27

[3]
Development Of A Three-Gene Prognostic Signature For Hepatitis B Virus Associated Hepatocellular Carcinoma Based On Integrated Transcriptomic Analysis.

J Cancer. 2018-4-30

[4]
Protein-coding genes combined with long noncoding RNA as a novel transcriptome molecular staging model to predict the survival of patients with esophageal squamous cell carcinoma.

Cancer Commun (Lond). 2018-4-9

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Clinical significance of calcium-binding protein S100A8 and S100A9 expression in non-small cell lung cancer.

Thorac Cancer. 2018-5-7

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Cost-Effectiveness Analyses of the 21-Gene Assay in Breast Cancer: Systematic Review and Critical Appraisal.

J Clin Oncol. 2018-4-16

[7]
Spotlight on the utility of the Oncotype DX breast cancer assay.

Int J Womens Health. 2018-2-21

[8]
MicroRNA-300 Regulates the Ubiquitination of PTEN through the CRL4B E3 Ligase in Osteosarcoma Cells.

Mol Ther Nucleic Acids. 2018-3-2

[9]
Multigene Signature Panels and Breast Cancer Therapy: Patterns of Use and Impact on Clinical Decision Making.

J Am Coll Surg. 2018-1-31

[10]
Expression of LDL receptor-related proteins (LRPs) in common solid malignancies correlates with patient survival.

PLoS One. 2017-10-31

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