Laboratory of Microbiology, Wageningen University & Research, Stippeneng 4, 6708 WE Wageningen, The Netherlands.
Department of Microbiology, IWWR, Radboud University Nijmegen, Heyendaalseweg 135, 6525 AJ Nijmegen, The Netherlands.
FEMS Microbiol Ecol. 2019 May 1;95(5). doi: 10.1093/femsec/fiz048.
Attempts for bioremediation of toxic organohalogens resulted in the identification of organohalide-respiring bacteria harbouring reductive dehalogenases (RDases) enzymes. RDases consist of the catalytic subunit (RdhA, encoded by rdhA) that does not have membrane-integral domains, and a small putative membrane anchor (RdhB, encoded by rdhB) that (presumably) locates the A subunit to the outside of the cytoplasmic membrane. Recent genomic studies identified a putative rdh gene in an uncultured deltaproteobacterial genome that was not accompanied by an rdhB gene, but contained transmembrane helixes in N-terminus. Therefore, rather than having a separate membrane anchor protein, this putative RDase is likely a hybrid of RdhA and RdhB, and directly connected to the membrane with transmembrane helixes. However, functionality of the hybrid putative RDase remains unknown. Further analysis showed that the hybrid putative rdh genes are present in the genomes of pure cultures and uncultured members of Bacteriodetes and Deltaproteobacteria, but also in the genomes of the candidate divisions. The encoded hybrid putative RDases have cytoplasmic or exoplasmic C-terminus localization, and cluster phylogenetically separately from the existing RDase groups. With increasing availability of (meta)genomes, more diverse and likely novel rdh genes are expected, but questions regarding their functionality and ecological roles remain open.
生物修复有毒有机卤代物的尝试导致了具有还原脱卤酶 (RDases) 酶的有机卤代物呼吸细菌的鉴定。RDases 由不具有膜整合结构域的催化亚基 (RdhA,由 rdhA 编码) 和推测位于细胞质膜外的小假定膜锚 (RdhB,由 rdhB 编码) 组成。最近的基因组研究在未培养的δ变形菌基因组中鉴定出一个假定的 rdh 基因,该基因没有伴随 rdhB 基因,但在 N 端含有跨膜螺旋。因此,这种假定的 RDase 可能不是具有单独的膜锚定蛋白,而是 RdhA 和 RdhB 的杂交体,并通过跨膜螺旋直接与膜连接。然而,杂交假定 RDase 的功能仍然未知。进一步的分析表明,杂交假定 rdh 基因存在于拟杆菌门和δ变形菌门的纯培养物和未培养成员的基因组中,但也存在于候选门的基因组中。编码的杂交假定 RDases 具有细胞质或外质 C 端定位,并在系统发育上与现有的 RDase 群分开聚类。随着 (宏) 基因组可用性的增加,预计会有更多不同且可能是新型的 rdh 基因,但关于它们的功能和生态作用的问题仍然存在。