State Key Laboratory of Microbial Metabolism, Joint International Research Laboratory of Metabolic and Developmental Sciences, and School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai, People's Republic of China.
School of Food and Biological Engineering, Zhengzhou University of Light Industry, Henan, People's Republic of China.
Appl Environ Microbiol. 2019 May 30;85(12). doi: 10.1128/AEM.00275-19. Print 2019 Jun 15.
,-Dimethylformamide (DMF) is one of the most common xenobiotic chemicals, and it can be easily emitted into the environment, where it causes harm to human beings. Herein, an efficient DMF-degrading strain, DM1, was isolated and identified as sp. This strain can use DMF as the sole source of carbon and nitrogen. Whole-genome sequencing of strain DM1 revealed that it has a 5.66-Mbp chromosome and a 200-kbp megaplasmid. The plasmid pLVM1 specifically harbors the genes essential for the initial steps of DMF degradation, and the chromosome carries the genes facilitating subsequent methylotrophic metabolism. Through analysis of the transcriptome sequencing data, the complete mineralization pathway and redundant gene clusters of DMF degradation were elucidated. The dimethylformamidase (DMFase) gene was heterologously expressed, and DMFase was purified and characterized. Plasmid pLVM1 is catabolically crucial for DMF utilization, as evidenced by the phenotype identification of the plasmid-free strain. This study systematically elucidates the molecular mechanisms of DMF degradation by DMF is a hazardous pollutant that has been used in the chemical industry, pharmaceutical manufacturing, and agriculture. Biodegradation as a method for removing DMF has received increasing attention. Here, we identified an efficient DMF degrader, sp. strain DM1, and characterized the complete DMF mineralization pathway and enzymatic properties of DMFase in this strain. This study provides insights into the molecular mechanisms and evolutionary advantage of DMF degradation facilitated by plasmid pLVM1 and redundant genes in strain DM1, suggesting the emergence of new ecotypes of .
,-二甲基甲酰胺(DMF)是最常见的异生物质化学物质之一,很容易排放到环境中,对人类造成危害。在此,我们分离并鉴定出一株高效的 DMF 降解菌,命名为 sp. 该菌可以利用 DMF 作为唯一的碳源和氮源。对菌株 DM1 的全基因组测序表明,其拥有一个 5.66-Mbp 的染色体和一个 200-kbp 的大型质粒。质粒 pLVM1 特异性地携带 DMF 降解初始步骤所需的基因,而染色体则携带促进后续甲基营养代谢的基因。通过分析转录组测序数据,阐明了 DMF 降解的完整矿化途径和冗余基因簇。异源表达了二甲基甲酰胺酶(DMFase)基因,并对其进行了纯化和表征。质粒 pLVM1 对 DMF 的利用至关重要,这可以从无质粒菌株的表型鉴定中得到证明。本研究系统地阐明了 DMF 是一种危险的污染物,已在化学工业、制药制造和农业中得到应用。生物降解作为去除 DMF 的一种方法受到了越来越多的关注。在此,我们鉴定出一株高效的 DMF 降解菌, sp. 菌株 DM1,并对该菌株中 DMF 的完全矿化途径和 DMFase 的酶学特性进行了表征。本研究为质粒 pLVM1 和菌株 DM1 中的冗余基因促进 DMF 降解的分子机制和进化优势提供了新的见解,表明了 的新生态型的出现。