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副拟杆菌属是从巴西东南沿海新型海洋海绵 Plakina 中分离出的厌氧菌的主要属。

Paraclostridium is the Main Genus of Anaerobic Bacteria Isolated from New Species of the Marine Sponge Plakina in the Brazilian Southeast Coast.

机构信息

Instituto de Microbiologia Paulo de Góes, Universidade Federal do Rio de Janeiro (UFRJ), Av. Carlos Chagas Filho, 373, Cidade Universitária, Rio de Janeiro, 21941-590, Brazil.

Museu Nacional, Universidade Federal do Rio de Janeiro (UFRJ), Av. Bartolomeu Gusmão, Quinta da Boa Vista s/n, Rio de Janeiro, 20940-040, Brazil.

出版信息

Curr Microbiol. 2019 Jun;76(6):713-722. doi: 10.1007/s00284-019-01684-x. Epub 2019 Apr 9.

Abstract

Despite the broad assessment of sponge bacterial diversity through cultivation-independent and dependent strategies, the knowledge focusing on cultivable anaerobes from this holobiont is still incipient. Plakina is a genus with the highest number of described species from the smallest of poriferan classes, Homoscleromorpha. The Brazilian Atlantic coast has been presenting itself as a hotspot for the discovery of new plakinidae species, with initial surveys just now concerning to characterize their microbiome. The current study aimed to isolate and identify strict anaerobes from recently described species of Plakina collected at the coast of Cabo Frio, RJ. Samples of four sympatric morphotypes of Plakina cyanorosea and Plakina cabofriense were collected on the coast of Cabo Frio, RJ. Using five different culture media, a total of 93 bacterial isolates were recovered, among which 60 were strict anaerobes and, ultimately, 34 remaining viable. A total of 76.5% from these strains were mostly identified as Clostridium bifermentans by mass spectrometry and 82.4% identified by 16S rRNA sequencing, almost all of them affiliated to the genus Paraclostridium, and with one isolate identified as Clostridium butyricum by both techniques. None of the anaerobic bacteria exhibited antimicrobial activity by the adopted screening test. The present work highlights not only the need for cultivation and characterization of the anaerobic microbiota from marine sponges but also adds the existing scarce knowledge of culturable bacterial communities from Homoscleromorph sponges from Brazilian coast.

摘要

尽管通过非培养依赖和依赖策略广泛评估了海绵细菌多样性,但对该整体共生体中可培养厌氧菌的了解仍然处于初期阶段。Plakina 是最小的多孔动物类 Homoscleromorpha 中描述物种数量最多的属。巴西大西洋海岸一直是发现新的 plakiniidae 物种的热点地区,最初的调查刚刚开始描述它们的微生物组。本研究旨在从最近在里约热内卢州卡波弗里奥海岸收集的 plakina 描述种中分离和鉴定严格厌氧菌。从里约热内卢州卡波弗里奥海岸收集了四种共生形态的 Plakina cyanorosea 和 Plakina cabofriense 的样本。使用五种不同的培养基,共回收了 93 个细菌分离物,其中 60 个是严格厌氧菌,最终有 34 个仍然存活。这些菌株中共有 76.5% 通过质谱法主要鉴定为 Clostridium bifermentans,82.4% 通过 16S rRNA 测序鉴定,几乎所有菌株都属于 Paraclostridium 属,其中一个菌株通过两种技术鉴定为 Clostridium butyricum。采用所采用的筛选试验,没有一种厌氧菌表现出抗菌活性。本工作不仅强调了从海洋海绵中培养和表征厌氧菌微生物群的必要性,而且还增加了巴西沿海 Homoscleromorph 海绵可培养细菌群落的现有稀缺知识。

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