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小丑鱼编码序列分析揭示了寿命进化中的分子趋同。

Analysis of the coding sequences of clownfish reveals molecular convergence in the evolution of lifespan.

机构信息

Leibniz Institute on Aging, Fritz Lipmann Institute, Jena, Germany.

Departamento de Fisiologia, Universidad de Murcia, Murcia, Spain.

出版信息

BMC Evol Biol. 2019 Apr 11;19(1):89. doi: 10.1186/s12862-019-1409-0.

Abstract

BACKGROUND

Standard evolutionary theories of aging postulate that reduced extrinsic mortality leads to evolution of longevity. Clownfishes of the genus Amphiprion live in a symbiotic relationship with sea anemones that provide protection from predators. We performed a survey and identified at least two species with a lifespan of over 20 years. Given their small size and ease of captive reproduction, clownfish lend themselves as experimental models of exceptional longevity. To identify genetic correlates of exceptional longevity, we sequenced the transcriptomes of Amphiprion percula and A. clarkii and performed a scan for positively-selected genes (PSGs).

RESULTS

The PSGs that we identified in the last common clownfish ancestor were compared with PSGs detected in long-lived mole rats and short-lived killifishes revealing convergent evolution in processes such as mitochondrial biogenesis. Among individual genes, the Mitochondrial Transcription Termination Factor 1 (MTERF1), was positively-selected in all three clades, whereas the Glutathione S-Transferase Kappa 1 (GSTK1) was under positive selection in two independent clades. For the latter, homology modelling strongly suggested that positive selection targeted enzymatically important residues.

CONCLUSIONS

These results indicate that specific pathways were recruited in independent lineages evolving an exceptionally extended or shortened lifespan and point to mito-nuclear balance as a key factor.

摘要

背景

衰老的标准进化理论假定,外在死亡率的降低会导致寿命的延长。双锯鱼属的小丑鱼与海葵共生,海葵为它们提供了免受捕食者侵害的保护。我们进行了一项调查,发现至少有两个物种的寿命超过 20 年。由于它们体型小,易于圈养繁殖,小丑鱼成为了研究异常长寿的实验模型。为了确定异常长寿的遗传相关性,我们对双锯鱼属的波纹唇鱼和克拉克小丑鱼进行了转录组测序,并对正选择基因(PSGs)进行了扫描。

结果

我们在最后一个共同的小丑鱼祖先中鉴定出的 PSGs 与在长寿的鼹形田鼠和短命的食蚊鱼中检测到的 PSGs 进行了比较,揭示了线粒体生物发生等过程中的趋同进化。在单个基因中,线粒体转录终止因子 1(MTERF1)在所有三个分支中都受到正选择,而谷胱甘肽 S-转移酶 Kappa 1(GSTK1)在两个独立的分支中受到正选择。对于后者,同源建模强烈表明,正选择针对的是酶活性重要的残基。

结论

这些结果表明,特定的途径在独立的进化支系中被招募,以延长或缩短寿命,并指出线粒体-核平衡是一个关键因素。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5f1f/6460853/af091f1e1dc6/12862_2019_1409_Fig1_HTML.jpg

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