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使用源自静电势的电荷的量子力学/分子力学-埃瓦尔德方法的解析梯度:理论、实现及其在水合电子的从头算分子动力学模拟中的应用

Analytic gradient for the QM/MM-Ewald method using charges derived from the electrostatic potential: Theory, implementation, and application to ab initio molecular dynamics simulation of the aqueous electron.

作者信息

Holden Zachary C, Rana Bhaskar, Herbert John M

机构信息

Department of Chemistry and Biochemistry, The Ohio State University, Columbus, Ohio 43210, USA.

出版信息

J Chem Phys. 2019 Apr 14;150(14):144115. doi: 10.1063/1.5089673.

Abstract

We report an implementation of periodic boundary conditions for mixed quantum mechanics/molecular mechanics (QM/MM) simulations, in which atomic partial charges are used to represent periodic images of the QM region. These charges are incorporated into the Fock matrix in a manner that preserves the variational nature of the self-consistent field procedure, and their interactions with the MM charges are summed using the conventional Ewald technique. To ensure that the procedure is stable in arbitrary basis sets, the atomic charges are derived by least-squares fit to the electrostatic potential generated by the QM region. We formulate and implement analytic energy gradients for the QM/MM-Ewald method and demonstrate that stable molecular dynamics simulations are thereby obtained. As a proof-of-concept application, we perform QM/MM simulations of a hydrated electron in bulk liquid water at the level of Hartree-Fock theory plus empirical dispersion. These simulations demonstrate that the "cavity model" of the aqueous electron, in which the spin density of the anionic defect is localized within an excluded volume in the liquid, is stable at room temperature on a time scale of at least several picoseconds. These results validate cavity-forming pseudopotential models of e(aq) that have previously been derived from static-exchange Hartree-Fock calculations, and cast doubt upon whether non-cavity-forming pseudopotentials are faithful to the underlying Hartree-Fock calculation from which they were obtained.

摘要

我们报告了一种用于混合量子力学/分子力学(QM/MM)模拟的周期性边界条件的实现方法,其中原子部分电荷用于表示QM区域的周期性镜像。这些电荷以一种保持自洽场程序变分性质的方式纳入福克矩阵,并且它们与MM电荷的相互作用使用传统的埃瓦尔德技术进行求和。为确保该程序在任意基组中都稳定,原子电荷通过对QM区域产生的静电势进行最小二乘法拟合来推导。我们为QM/MM - 埃瓦尔德方法制定并实现了解析能量梯度,并证明由此可获得稳定的分子动力学模拟。作为概念验证应用,我们在哈特里 - 福克理论加经验色散水平下对体相液态水中的水合电子进行了QM/MM模拟。这些模拟表明,水合电子的“空穴模型”,即阴离子缺陷的自旋密度局限于液体中的排除体积内,在室温下至少在几皮秒的时间尺度上是稳定的。这些结果验证了先前从静态交换哈特里 - 福克计算得出的e(aq)的空穴形成赝势模型,并对非空穴形成赝势是否忠实于从中获得它们的基础哈特里 - 福克计算提出了质疑。

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