Deluche Elise, Bessette Barbara, Durand Stephanie, Caire François, Rigau Valérie, Robert Sandrine, Chaunavel Alain, Forestier Lionel, Labrousse François, Jauberteau Marie-Odile, Durand Karine, Lalloué Fabrice
EA3842 CAPTuR, Faculty of Medicine, University of Limoges, 2 Rue du Docteur Marcland, 87025 Limoges, France.
Department of Medical Oncology, Limoges University Hospital, 2 rue Martin Luther King, 87042 Limoges, France.
Cancers (Basel). 2019 Apr 15;11(4):544. doi: 10.3390/cancers11040544.
The aim of this study was to identify relevant biomarkers for the prognosis of glioma considering current molecular changes such as mutation and 1p19q deletion. Gene expression profiling was performed using the TaqMan Low Density Array and hierarchical clustering using 96 selected genes in 64 patients with newly diagnosed glioma. The expression dataset was validated on a large independent cohort from The Cancer Genome Atlas (TCGA) database. A differential expression panel of 26 genes discriminated two prognostic groups regardless of grade and molecular groups of tumors: Patients having a poor prognosis with a median overall survival (OS) of 23.0 ± 9.6 months (group A) and patients having a good prognosis with a median OS of 115.0 ± 6.6 months (group B) ( = 0.007). Hierarchical clustering of the glioma TCGA cohort supported the prognostic value of these 26 genes ( < 0.0001). Among these genes, and were identified as factors that can be associated with status and 1p/19q co-deletion to distinguish between prognostic groups of glioma from the TCGA cohort. Therefore, associated with seemed to be able to provide new information on glioma prognosis.
本研究的目的是考虑到当前的分子变化,如突变和1p19q缺失,确定与胶质瘤预后相关的生物标志物。使用TaqMan低密度阵列进行基因表达谱分析,并对64例新诊断的胶质瘤患者中选择的96个基因进行层次聚类。该表达数据集在来自癌症基因组图谱(TCGA)数据库的一个大型独立队列中得到验证。一个由26个基因组成的差异表达面板区分了两个预后组,而不考虑肿瘤的分级和分子组:预后较差的患者中位总生存期(OS)为23.0±9.6个月(A组),预后良好的患者中位OS为115.0±6.6个月(B组)(P = 0.007)。胶质瘤TCGA队列的层次聚类支持这26个基因的预后价值(P < 0.0001)。在这些基因中,[基因名称1]和[基因名称2]被确定为可与[相关状态]和1p/19q共缺失相关的因素,以区分来自TCGA队列的胶质瘤预后组。因此,与[相关状态]相关的[基因名称]似乎能够提供有关胶质瘤预后的新信息。