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新型铁死亡相关基因在胶质瘤中的显著免疫和临床价值。

Remarkable immune and clinical value of novel ferroptosis-related genes in glioma.

机构信息

Department of Neurosurgery, The Fourth Hospital of Hebei Medical University, 12 Health Road, Shijiazhuang, 050011, Hebei, People's Republic of China.

Department of Orthopedics, The Fourth Hospital of Hebei Medical University, Shijiazhuang, Hebei, People's Republic of China.

出版信息

Sci Rep. 2022 Jul 27;12(1):12854. doi: 10.1038/s41598-022-17308-7.

Abstract

Ferroptosis is a neoteric model of regulated cell death that shows great potential for the understanding of tumor immunology and as a target for therapy. The present study aimed to identify ferroptosis-related differentially expressed genes (DEGs) in glioma and to explore their value through systematic analysis. Ferroptosis-related DEGs were identified through the Gene Expression Omnibus database in combination with the FerrDb database and analyzed in the Genotype-Tissue Expression database and The Cancer Genome Atlas database. Possible signaling pathways involved were explored by construction of enrichment analysis and protein-protein interaction of these DEGs. Potential regulation of the immune microenvironment, immune checkpoint and chemokine was postulated by immune analysis. A prognosis model for glioma was developed using survival analysis, exhibited by the nomogram and evaluated by the calibration curve. The prognostic value of the model was validated by using an independent cohort. A total of 15 ferroptosis-related DEGs were identified, including 7 down-regulated and 8 up-regulated, with ATP6V1G2, GABARAPL1 and GOT1 as hub genes. The expression of all 3 hub genes was positively correlated with T follicular helper cells and natural killer CD56bright cells. These hub genes were negatively correlated with the macrophage cell type as well as B7H3, PDCD1, LAG3 and CXCL16, CXCR4, CCR5. Low expression of all 3 hub genes was associated with poor prognosis in glioma cases. ATP6V1G2 might be an independent prognostic factor and, as such, a high-precision prognostic model of glioma was constructed. We identified novel ferroptosis-related genes with clinical value in glioma and revealed their possible tumor immune relevance. Furthermore, in glioma, we pinpointed underlying critical elements of the chemokine, immune microenvironment and immune checkpoint, and were able to develop a predictive model of prognosis.

摘要

铁死亡是一种新的细胞死亡模式,它在肿瘤免疫学研究和治疗靶点方面具有很大的潜力。本研究旨在通过系统分析鉴定脑胶质瘤中与铁死亡相关的差异表达基因(DEGs),并探讨其价值。通过基因表达综合数据库与 FerrDb 数据库相结合,鉴定铁死亡相关 DEGs,在基因型-组织表达数据库和癌症基因组图谱数据库中进行分析。通过这些 DEGs 的富集分析和蛋白质-蛋白质相互作用构建来探讨可能涉及的信号通路。通过免疫分析假设对免疫微环境、免疫检查点和趋化因子的潜在调节作用。通过生存分析构建了脑胶质瘤预后模型,通过列线图展示,并通过校准曲线进行评估。通过使用独立队列验证模型的预后价值。共鉴定出 15 个与铁死亡相关的 DEGs,包括 7 个下调和 8 个上调,其中 ATP6V1G2、GABARAPL1 和 GOT1 为枢纽基因。所有 3 个枢纽基因的表达均与滤泡辅助性 T 细胞和自然杀伤细胞 CD56bright 细胞呈正相关。这些枢纽基因与巨噬细胞类型以及 B7H3、PDCD1、LAG3 和 CXCL16、CXCR4、CCR5 呈负相关。所有 3 个枢纽基因的低表达与脑胶质瘤患者的预后不良相关。ATP6V1G2 可能是一个独立的预后因素,因此构建了一个高精度的脑胶质瘤预后模型。我们在脑胶质瘤中鉴定出具有临床价值的新的铁死亡相关基因,并揭示了它们可能与肿瘤免疫的相关性。此外,在脑胶质瘤中,我们确定了趋化因子、免疫微环境和免疫检查点的关键因素,并能够开发预后预测模型。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a9c4/9329323/679eff25f036/41598_2022_17308_Fig1_HTML.jpg

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