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CANCROX:一个跨物种癌症治疗数据库。

CANCROX: a cross-species cancer therapy database.

机构信息

Biotechnology Unit, University of Ribeirão Preto, Av. Costábile Romano, Ribeirão Preto, SP, Brazil.

Federal Institute of Education, Science and Technology of South of Minas Gerais.

出版信息

Database (Oxford). 2019 Jan 1;2019. doi: 10.1093/database/baz044.

Abstract

Cancer comprises a set of more than 200 diseases resulting from the uncontrolled growth of cells that invade tissues and organs, which can spread to other regions of the body. The types of cancer found in humans are also described in animal models, a fact that has raised the interest of the scientific community in comparative oncology studies. In this study, bioinformatics tools were used to implement a computational model that uses text mining and natural language processing to construct a reference database that relates human and canine genes potentially associated with cancer, defining genetic pathways and information about cancer and cancer therapies. The CANCROX reference database was constructed by processing the scientific literature and lists more than 1300 drugs and therapies used to treat cancer, in addition to over 10 000 combinations of these drugs, including 40 types of cancer. A user-friendly interface was developed that enables researchers to search for different types of information about therapies, drug combinations, genes and types of cancer. In addition, data visualization tools allow to explore and relate different drugs and therapies for the treatment of cancer, providing information for groups studying animal models, in this case the dog, as well as groups studying cancer in humans.

摘要

癌症由超过 200 种疾病组成,这些疾病是由细胞不受控制的生长引起的,这些细胞会侵入组织和器官,并扩散到身体的其他部位。在动物模型中也发现了与人类相同类型的癌症,这一事实引起了科学界对比较肿瘤学研究的兴趣。在这项研究中,使用生物信息学工具来实现一个计算模型,该模型使用文本挖掘和自然语言处理来构建一个参考数据库,该数据库将人类和犬科动物与癌症相关的潜在基因联系起来,定义遗传途径以及有关癌症和癌症治疗的信息。通过处理科学文献,构建了 CANCROX 参考数据库,列出了 1300 多种用于治疗癌症的药物和疗法,以及这些药物的 10000 多种组合,包括 40 种癌症。开发了一个用户友好的界面,使研究人员能够搜索有关疗法、药物组合、基因和癌症类型的不同类型的信息。此外,数据可视化工具允许探索和关联用于治疗癌症的不同药物和疗法,为研究动物模型(在这种情况下是狗)的小组以及研究人类癌症的小组提供信息。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/934a/6482323/07837cdf9641/baz044f1.jpg

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