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新种黄色黄杆菌,从一个淡水湖分离得到。

Flavobacterium sufflavum sp. nov., isolated from a freshwater lake.

作者信息

Chen Wen-Ming, Xie Yi-Ru, Kwon Soon-Wo, Sheu Shih-Yi

机构信息

1​Laboratory of Microbiology, Department of Seafood Science, National Kaohsiung University of Science and Technology, Kaohsiung City 811, PR China.

2​Agricultural Microbiology Division, National Institute of Agricultural Sciences, Rural Development Administration, Wanju-gun, Jeollabuk-do 55365, Republic of Korea.

出版信息

Int J Syst Evol Microbiol. 2019 Jun;69(6):1705-1713. doi: 10.1099/ijsem.0.003382. Epub 2019 Apr 29.

Abstract

A bacterial strain, BBQ-12, was isolated from a freshwater lake in Taiwan. The strain was Gram-stain-negative, strictly aerobic, motile by gliding, rod-shaped and formed yellow colonies. Optimal growth occurred at 25 °C, pH 6 and in the absence of NaCl. Phylogenetic analyses based on 16S rRNA gene sequences and coding sequences of 92 protein clusters indicated that strain BBQ-12 formed a phylogenetic lineage in the genus Flavobacterium. Strain BBQ-12 was most closely related to Flavobacterium fluminis 3R17 with 98.1 % 16S rRNA gene sequence similarity. Strain BBQ-12 showed 74.4-83.1 % average nucleotide identity and 16.0-21.8 % digital DNA-DNA hybridization identity with the type strains of other closely related Flavobacterium species. Strain BBQ-12 contained iso-C15 : 0, summed feature 3 (C16 : 1ω6c and/or C16 : 1ω7c) and anteiso-C15 : 0 as the predominant fatty acids. The polar lipid profile consisted of phosphatidylethanolamine, four uncharacterized aminophospholipids and three uncharacterized phospholipids. The major polyamine was homospermidine. The major isoprenoid quinone was MK-6. The DNA G+C content of the genomic DNA was 34.2 mol%. Differential phenotypic properties, together with the phylogenetic inference, demonstrate that strain BBQ-12 should be classified as a novel species of the genus Flavobacterium, for which the name Flavobacteriumsufflavum sp. nov. is proposed. The type strain is BBQ-12 (=BCRC 81049=LMG 30051=KCTC 52809).

摘要

从台湾的一个淡水湖分离出一株细菌,编号为BBQ-12。该菌株革兰氏染色阴性,严格需氧,靠滑行运动,呈杆状,形成黄色菌落。最适生长温度为25 °C,pH值为6,且无氯化钠存在。基于16S rRNA基因序列和92个蛋白质簇的编码序列进行的系统发育分析表明,菌株BBQ-12在黄杆菌属中形成了一个系统发育谱系。菌株BBQ-12与河流黄杆菌3R17关系最为密切,16S rRNA基因序列相似度为98.1%。菌株BBQ-12与其他密切相关的黄杆菌属模式菌株的平均核苷酸同一性为74.4-83.1%,数字DNA-DNA杂交同一性为16.0-21.8%。菌株BBQ-12以异-C15 : 0、总和特征3(C16 : 1ω6c和/或C16 : 1ω7c)和anteiso-C15 : 0作为主要脂肪酸。极性脂质谱由磷脂酰乙醇胺、四种未鉴定的氨基磷脂和三种未鉴定的磷脂组成。主要的多胺是高亚精胺。主要的类异戊二烯醌是MK-6。基因组DNA的G+C含量为34.2摩尔%。不同的表型特征以及系统发育推断表明,菌株BBQ-12应被归类为黄杆菌属的一个新物种,为此提出新名称黄褐黄杆菌(Flavobacteriumsufflavum sp. nov.)。模式菌株为BBQ-12(=BCRC 81049=LMG 30051=KCTC 52809)。

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