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与贝克型肌营养不良相关的蛋白质相互作用图谱

Protein Interaction Mapping related to Becker Muscular Dystrophy.

作者信息

Peyvandi Ali Azghar, Okhovatian Farshad, Rezaei Tavirani Majid, Zamanian Azodi Mona, Rezaei Tavirani Mostafa

机构信息

Hearing Disorders Research Center, Shahid Beheshti University of Medical Sciences, Tehran, Iran.

Physiotherapy Research Centre, School of Rehabilitation, Shahid Beheshti University of Medical Sciences, Tehran, Iran.

出版信息

Iran J Child Neurol. 2019 Spring;13(2):125-134.

PMID:31037085
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC6451862/
Abstract

OBJECTIVE

Becker Muscular Dystrophy (BMD) is a neuromuscular disorder which is incurable. In this research protein interaction network of most associated proteins with BMD to provide better clarification of disorder underlying mechanism was investigated.

MATERIALS & METHODS: The related genes to BMD were retrieved via string database and conducted by Cytoscape and the related algorithms. The network centrality analysis was performed based on degree, betweenness, closeness, and stress parameters. Gene ontology and clustering were performed via ClueGO analysis.

RESULTS

DMD as the super-hub as well as other central proteins including UTRN, TTN, DNM2, and RYR1 are important in BMD in terms of interactive features. The impairment of muscular contraction may be vital in BMD disease pathogenesis as it is the highlighted biological process term obtained by ClueGO analysis.

CONCLUSION

DMD targeting may be the main concern for dystrophy clinical approaches. However, the other suggested proteins should be evaluated. Targeting these key proteins are required for treatment goals following extensive validation studies.

摘要

目的

贝克尔肌营养不良症(BMD)是一种无法治愈的神经肌肉疾病。本研究调查了与BMD最相关蛋白质的蛋白质相互作用网络,以更好地阐明该疾病的潜在机制。

材料与方法

通过STRING数据库检索与BMD相关的基因,并利用Cytoscape及相关算法进行分析。基于度、介数、紧密性和应力参数进行网络中心性分析。通过ClueGO分析进行基因本体论和聚类分析。

结果

DMD作为超级中心节点以及其他中心蛋白,包括UTRN、TTN、DNM2和RYR1,在BMD的相互作用特征方面具有重要意义。肌肉收缩受损在BMD疾病发病机制中可能至关重要,因为这是通过ClueGO分析获得的突出生物学过程术语。

结论

靶向DMD可能是肌营养不良症临床治疗方法的主要关注点。然而,其他建议的蛋白质也应进行评估。在经过广泛的验证研究后,靶向这些关键蛋白质对于治疗目标是必要的。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b38f/6451862/135afc79e7b3/ijcn-13-125-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b38f/6451862/97f66961bae6/ijcn-13-125-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b38f/6451862/135afc79e7b3/ijcn-13-125-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b38f/6451862/97f66961bae6/ijcn-13-125-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b38f/6451862/135afc79e7b3/ijcn-13-125-g002.jpg

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Topological and functional analysis of nonalcoholic steatohepatitis through protein interaction mapping.通过蛋白质相互作用图谱对非酒精性脂肪性肝炎进行拓扑学和功能分析。
Gastroenterol Hepatol Bed Bench. 2016 Dec;9(Suppl1):S23-S28.
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Introduction of inflammatory bowel disease biomarkers panel using protein-protein interaction (PPI) network analysis.利用蛋白质-蛋白质相互作用(PPI)网络分析介绍炎症性肠病生物标志物面板
Gastroenterol Hepatol Bed Bench. 2016 Dec;9(Suppl1):S8-S13.
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The STRING database in 2017: quality-controlled protein-protein association networks, made broadly accessible.2017年的STRING数据库:质量可控的蛋白质-蛋白质相互作用网络,广泛可用。
Nucleic Acids Res. 2017 Jan 4;45(D1):D362-D368. doi: 10.1093/nar/gkw937. Epub 2016 Oct 18.
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Melatonin promotes ATO-induced apoptosis in MCF-7 cells: Proposing novel therapeutic potential for breast cancer.褪黑素促进 MCF-7 细胞中 ATO 的细胞凋亡:为乳腺癌提出新的治疗潜力。
Biomed Pharmacother. 2016 Oct;83:456-465. doi: 10.1016/j.biopha.2016.07.004. Epub 2016 Jul 16.
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A Novel Mutation in DMD (c.10797+5G>A) Causes Becker Muscular Dystrophy Associated with Intellectual Disability.DMD基因的一种新型突变(c.10797+5G>A)导致与智力残疾相关的贝克型肌营养不良症。
J Dev Behav Pediatr. 2016 Apr;37(3):239-44. doi: 10.1097/DBP.0000000000000262.
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Cytoscape.js: a graph theory library for visualisation and analysis.Cytoscape.js:一个用于可视化和分析的图论库。
Bioinformatics. 2016 Jan 15;32(2):309-11. doi: 10.1093/bioinformatics/btv557. Epub 2015 Sep 28.
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Gastroenterol Hepatol Bed Bench. 2015 Summer;8(3):215-24.
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Dystrophin genotype-cardiac phenotype correlations in Duchenne and Becker muscular dystrophies using cardiac magnetic resonance imaging.利用心脏磁共振成像研究杜氏和贝克型肌营养不良症中肌营养不良蛋白基因型与心脏表型的相关性。
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Protein-protein interaction networks (PPI) and complex diseases.蛋白质-蛋白质相互作用网络(PPI)与复杂疾病。
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