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冷冻电镜密度图拟合驱动的人可溶性鸟苷酸环化酶(hsGC)的计算机模拟结构揭示了一氧化氮结合后结构域间相互作用的功能方面。

Cryo-EM density map fitting driven in-silico structure of human soluble guanylate cyclase (hsGC) reveals functional aspects of inter-domain cross talk upon NO binding.

作者信息

Khalid Rana Rehan, Maryam Arooma, Fadouloglou Vasiliki E, Siddiqi Abdul Rauf, Zhang Yang

机构信息

Department of Biosciences, COMSATS University, Islamabad, 45550, Pakistan; Department of Biostatistics and Medical Informatics, Acibadem Universitesi, Istanbul, 34752, Turkey; Department of Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, MI, 48109-2218, USA.

Department of Biosciences, COMSATS University, Islamabad, 45550, Pakistan; Department of Pharmaceutical Chemistry, Biruni Universitesi, Istanbul, 34010, Turkey.

出版信息

J Mol Graph Model. 2019 Jul;90:109-119. doi: 10.1016/j.jmgm.2019.04.009. Epub 2019 Apr 24.

Abstract

The human soluble Guanylate Cyclase (hsGC) is a heterodimeric heme-containing enzyme which regulates many important physiological processes. In eukaryotes, hsGC is the only known receptor for nitric oxide (NO) signaling. Improper NO signaling results in various disease conditions such as neurodegeneration, hypertension, stroke and erectile dysfunction. To understand the mechanisms of these diseases, structure determination of the hsGC dimer complex is crucial. However, so far all the attempts for the experimental structure determination of the protein were unsuccessful. The current study explores the possibility to model the quaternary structure of hsGC using a hybrid approach that combines state-of-the-art protein structure prediction tools with cryo-EM experimental data. The resultant 3D model shows close consistency with structural and functional insights extracted from biochemistry experiment data. Overall, the atomic-level complex structure determination of hsGC helps to unveil the inter-domain communication upon NO binding, which should be of important usefulness for elucidating the biological function of this important enzyme and for developing new treatments against the hsGC associated human diseases.

摘要

人可溶性鸟苷酸环化酶(hsGC)是一种含血红素的异源二聚体酶,它调节许多重要的生理过程。在真核生物中,hsGC是已知的唯一一氧化氮(NO)信号受体。NO信号传导异常会导致各种疾病,如神经退行性变、高血压、中风和勃起功能障碍。为了解这些疾病的发病机制,确定hsGC二聚体复合物的结构至关重要。然而,到目前为止,所有通过实验确定该蛋白质结构的尝试均未成功。当前的研究探索了使用一种混合方法来模拟hsGC四级结构的可能性,该方法将最先进的蛋白质结构预测工具与冷冻电镜实验数据相结合。所得的三维模型与从生物化学实验数据中提取的结构和功能见解显示出密切的一致性。总体而言,hsGC的原子水平复合物结构测定有助于揭示NO结合后的结构域间通讯,这对于阐明这种重要酶的生物学功能以及开发针对与hsGC相关的人类疾病的新疗法具有重要意义。

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