实验室连续保存的四种血清型登革病毒原型株的全基因组序列
Complete Genome Sequences of Four Serotypes of Dengue Virus Prototype Continuously Maintained in the Laboratory.
作者信息
Chin-Inmanu Kwanrutai, Suttitheptumrong Aroonroong, Sangsrakru Duangjai, Mairiang Dumrong, Tangphatsornruang Sithichoke, Malasit Prida, Suriyaphol Prapat
机构信息
Division of Bioinformatics and Data Management for Research, Research Group and Research Network Division, Faculty of Medicine Siriraj Hospital, Mahidol University, Bangkok, Thailand.
Center of Excellence in Bioinformatics and Clinical Data Management, Research Group and Research Network Division, Faculty of Medicine Siriraj Hospital, Mahidol University, Bangkok, Thailand.
出版信息
Microbiol Resour Announc. 2019 May 9;8(19):e00199-19. doi: 10.1128/MRA.00199-19.
Abstract
Dengue prototype strains are widely used for virological study. The strains presented here have been cultured under different laboratory environments, resulting in accumulating genetic variations. We present the genomes of four serotypes of the dengue prototype strain that were continuously maintained in the laboratory. These genomes contain bases different from those of the original prototype strains in GenBank.
摘要
登革热原型毒株被广泛用于病毒学研究。这里展示的毒株是在不同实验室环境下培养的，导致积累了遗传变异。我们展示了在实验室中持续保存的登革热原型毒株四个血清型的基因组。这些基因组所含碱基与GenBank中原始原型毒株的碱基不同。
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本文引用的文献
1
Molecular determinants of plaque size as an indicator of dengue virus attenuation.作为登革病毒减毒指标的斑块大小的分子决定因素。
Sci Rep. 2016 May 17;6:26100. doi: 10.1038/srep26100.
2
Complete Genome Sequences of Dengue Virus Type 1 to 4 Strains Used for the Development of CBER/FDA RNA Reference Reagents and WHO International Standard Candidates for Nucleic Acid Testing.用于开发CBER/FDA RNA参考试剂和WHO核酸检测国际标准候选品的1至4型登革病毒株的全基因组序列
Genome Announc. 2016 Feb 11;4(1):e01583-15. doi: 10.1128/genomeA.01583-15.
3
Feasibility of using 454 pyrosequencing for studying quasispecies of the whole dengue viral genome.使用 454 焦磷酸测序技术研究整个登革热病毒基因组准种的可行性。
BMC Genomics. 2012;13 Suppl 7(Suppl 7):S7. doi: 10.1186/1471-2164-13-S7-S7. Epub 2012 Dec 13.
4
De novo assembly of highly diverse viral populations.从头组装高度多样化的病毒群体。
BMC Genomics. 2012 Sep 13;13:475. doi: 10.1186/1471-2164-13-475.
5
Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration.综合基因组浏览器（IGV）：高性能基因组学数据可视化和探索。
Brief Bioinform. 2013 Mar;14(2):178-92. doi: 10.1093/bib/bbs017. Epub 2012 Apr 19.
6
Quasispecies of dengue virus.登革病毒准种
Trop Med Health. 2011 Dec;39(4 Suppl):29-36. doi: 10.2149/tmh.2011-S02. Epub 2011 Aug 25.
7
Integrative genomics viewer.整合基因组浏览器。
Nat Biotechnol. 2011 Jan;29(1):24-6. doi: 10.1038/nbt.1754.
8
BLAST+: architecture and applications.BLAST+：体系结构与应用。
BMC Bioinformatics. 2009 Dec 15;10:421. doi: 10.1186/1471-2105-10-421.
9
Fast and accurate short read alignment with Burrows-Wheeler transform.使用Burrows-Wheeler变换进行快速准确的短读比对。
Bioinformatics. 2009 Jul 15;25(14):1754-60. doi: 10.1093/bioinformatics/btp324. Epub 2009 May 18.
10
Identification of a major determinant of mouse neurovirulence of dengue virus type 2 using stably cloned genomic-length cDNA.利用稳定克隆的基因组长度互补DNA鉴定登革2型病毒小鼠神经毒力的主要决定因素。
J Gen Virol. 1998 Mar;79 ( Pt 3):437-46. doi: 10.1099/0022-1317-79-3-437.
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