Dudkiewicz Małgorzata, Pawłowski Krzysztof
Department of Experimental Design and Bioinformatics, Faculty of Agriculture and Biology, Warsaw University of Life Sciences, Warszawa, Poland.
Department of Translational Mecicine, Clinical Sciences, Lund University, Lund, Sweden.
PeerJ. 2019 May 1;7:e6863. doi: 10.7717/peerj.6863. eCollection 2019.
The presence of many completely uncharacterized proteins, even in well-studied organisms such as humans, seriously hampers a full understanding of the functioning of living cells. One such example is the human protein C12ORF4, which belongs to the DUF2362 family, present in many eukaryotic lineages and conserved in metazoans. The only functional information available on C12ORF4 (Chromosome 12 Open Reading Frame 4) is its involvement in mast cell degranulation and its being a genetic cause of autosomal intellectual disability. Bioinformatics analysis of the DUF2362 family provides strong evidence that it is a novel member of the Macro clan/superfamily. Sequence similarity analysis versus other representatives of the Macro superfamily of ADP-ribose-binding proteins and mapping sequence conservation on predicted three-dimensional structure provides hypotheses regarding the molecular function for members of the DUF2362 family. For example, the available functional data suggest a possible role for C12ORF4 in ADP-ribosylation signaling in asthma and related inflammatory diseases. This novel family appears to be a likely novel ADP-ribosylation "reader" and "eraser," a previously unnoticed putative new player in cell signaling by this emerging post-translational modification.
即使在像人类这样已被充分研究的生物体中,存在许多完全未被表征的蛋白质,这严重阻碍了对活细胞功能的全面理解。一个这样的例子是人类蛋白质C12ORF4,它属于DUF2362家族,存在于许多真核生物谱系中并在后生动物中保守。关于C12ORF4(第12号染色体开放阅读框4)唯一可用的功能信息是它参与肥大细胞脱颗粒以及它是常染色体智力残疾的一个遗传原因。对DUF2362家族的生物信息学分析提供了强有力的证据,表明它是Macro家族/超家族的一个新成员。与ADP - 核糖结合蛋白的Macro超家族的其他代表进行序列相似性分析,并在预测的三维结构上绘制序列保守性,为DUF2362家族成员的分子功能提供了假设。例如,现有的功能数据表明C12ORF4在哮喘和相关炎症性疾病的ADP - 核糖基化信号传导中可能发挥作用。这个新家族似乎是一个可能的新型ADP - 核糖基化“读取器”和“擦除器”,是这种新兴的翻译后修饰在细胞信号传导中一个以前未被注意到的假定新参与者。