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一个在真核生物进化中保守的新预测的类ADP核糖基转移酶家族。

A novel predicted ADP-ribosyltransferase-like family conserved in eukaryotic evolution.

作者信息

Wyżewski Zbigniew, Gradowski Marcin, Krysińska Marianna, Dudkiewicz Małgorzata, Pawłowski Krzysztof

机构信息

Institute of Biological Sciences, Cardinal Stefan Wyszynski University in Warsaw, Warszawa, Poland.

Department of Biochemistry and Microbiology, Warsaw University of Life Sciences - SGGW, Warszawa, Poland.

出版信息

PeerJ. 2021 Mar 10;9:e11051. doi: 10.7717/peerj.11051. eCollection 2021.

Abstract

The presence of many completely uncharacterized proteins, even in well-studied organisms such as humans, seriously hampers full understanding of the functioning of the living cells. ADP-ribosylation is a common post-translational modification of proteins; also nucleic acids and small molecules can be modified by the covalent attachment of ADP-ribose. This modification, important in cellular signalling and infection processes, is usually executed by enzymes from the large superfamily of ADP-ribosyltransferases (ARTs). Here, using bioinformatics approaches, we identify a novel putative ADP-ribosyltransferase family, conserved in eukaryotic evolution, with a divergent active site. The hallmark of these proteins is the ART domain nestled between flanking leucine-rich repeat (LRR) domains. LRRs are typically involved in innate immune surveillance. The novel family appears as putative novel ADP-ribosylation-related actors, most likely pseudoenzymes. Sequence divergence and lack of clearly detectable "classical" ART active site suggests the novel domains are pseudoARTs, yet atypical ART activity, or alternative enzymatic activity cannot be excluded. We propose that this family, including its human member LRRC9, may be involved in an ancient defense mechanism, with analogies to the innate immune system, and coupling pathogen detection to ADP-ribosyltransfer or other signalling mechanisms.

摘要

即使在像人类这样已被深入研究的生物体中,仍存在许多完全未被表征的蛋白质,这严重阻碍了我们对活细胞功能的全面理解。ADP-核糖基化是一种常见的蛋白质翻译后修饰;核酸和小分子也可以通过ADP-核糖的共价连接进行修饰。这种修饰在细胞信号传导和感染过程中很重要,通常由来自ADP-核糖基转移酶(ARTs)大型超家族的酶执行。在这里,我们使用生物信息学方法,鉴定了一个在真核生物进化中保守的、具有不同活性位点的新型假定ADP-核糖基转移酶家族。这些蛋白质的标志是位于侧翼富含亮氨酸重复序列(LRR)结构域之间的ART结构域。LRR通常参与先天免疫监测。这个新家族似乎是假定的新型ADP-核糖基化相关因子,很可能是假酶。序列差异和缺乏明显可检测到的“经典”ART活性位点表明这些新结构域是假ARTs,但不能排除非典型的ART活性或其他酶活性。我们提出,这个家族,包括其人类成员LRRC9,可能参与了一种古老的防御机制,类似于先天免疫系统,并将病原体检测与ADP-核糖基转移或其他信号传导机制联系起来。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d6b4/7955679/1d46d2c953ed/peerj-09-11051-g001.jpg

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