Jiangsu Key Laboratory for Biodiversity and Biotechnology, College of Life Sciences, Nanjing Normal University, China.
First Institute of Oceanography, Ministry of Natural Resources, Qingdao, China.
Genome Biol Evol. 2019 Jul 1;11(7):1897-1908. doi: 10.1093/gbe/evz104.
Psychrophilic green algae from independent phylogenetic lines thrive in the polar extreme environments, but the hypothesis that their psychrophilic characteristics appeared through parallel routes of molecular evolution remains untested. The recent surge of transcriptome data enables large-scale evolutionary analyses to investigate the genetic basis for the adaptations to the Antarctic extreme environment, and the identification of the selective forces that drive molecular evolution is the foundation to understand the strategies of cold adaptation. Here, we conducted transcriptome sequencing of two Antarctic psychrophilic green algae (Chlamydomonas sp. ICE-L and Tetrabaena socialis) and performed positive selection and convergent substitution analyses to investigate their molecular convergence and adaptive strategies against extreme cold conditions. Our results revealed considerable shared positively selected genes and significant evidence of molecular convergence in two Antarctic psychrophilic algae. Significant evidence of positive selection and convergent substitution were detected in genes associated with photosynthetic machinery, multiple antioxidant systems, and several crucial translation elements in Antarctic psychrophilic algae. Our study reveals that the psychrophilic algae possess more stable photosynthetic apparatus and multiple protective mechanisms and provides new clues of parallel adaptive evolution in Antarctic psychrophilic green algae.
从独立进化枝的嗜冷绿藻在极地极端环境中茁壮成长,但它们的嗜冷特性是通过分子进化的平行途径出现的假设仍未得到检验。最近转录组数据的激增使得大规模的进化分析能够研究适应南极极端环境的遗传基础,而确定驱动分子进化的选择压力是理解冷适应策略的基础。在这里,我们对两种南极嗜冷绿藻(Chlamydomonas sp. ICE-L 和 Tetrabaena socialis)进行了转录组测序,并进行了正选择和趋同替代分析,以研究它们对极端寒冷条件的分子趋同和适应策略。我们的结果揭示了两种南极嗜冷藻类中相当多的共同正选择基因和显著的分子趋同证据。在与光合作用机制、多种抗氧化系统以及南极嗜冷藻类中几个关键翻译元件相关的基因中,检测到了显著的正选择和趋同替代的证据。我们的研究表明,嗜冷藻类具有更稳定的光合作用装置和多种保护机制,并为南极嗜冷绿藻的平行适应进化提供了新的线索。