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丝氨酸/精氨酸丰富的剪接调节蛋白家族:研究剪接异构体功能的新方法。

Serine/Arginine-rich protein family of splicing regulators: New approaches to study splice isoform functions.

机构信息

Division of Biological Sciences, 4700 King Abdullah University of Science and Technology, Thuwal 23955-6900, Saudi Arabia.

Laboratory for Genome Engineering, Division of Biological Sciences, 4700 King Abdullah University of Science and Technology, Thuwal 23955-6900, Saudi Arabia.

出版信息

Plant Sci. 2019 Jun;283:127-134. doi: 10.1016/j.plantsci.2019.02.017. Epub 2019 Mar 12.

Abstract

Serine/arginine-rich (SR) proteins are conserved RNA-binding proteins that play major roles in RNA metabolism. They function as molecular adaptors, facilitate spliceosome assembly and modulate constitutive and alternative splicing of pre-mRNAs. Pre-mRNAs encoding SR proteins and many other proteins involved in stress responses are extensively alternatively spliced in response to diverse stresses. Hence, it is proposed that stress-induced changes in splice isoforms contribute to the adaptation of plants to stress responses. However, functions of most SR genes and their splice isoforms in stress responses are not known. Lack of easy and robust tools hindered the progress in this area. Emerging technologies such as CRISPR/Cas9 will facilitate studies of SR function by enabling the generation of single and multiple knock-out mutants of SR subfamily members. Moreover, CRISPR/Cas13 allows targeted manipulation of splice isoforms from SR and other genes in a constitutive or tissue-specific manner to evaluate functions of individual splice variants. Identification of the in vivo targets of SR proteins and their splice variants using the recently developed TRIBE (Targets of RNA-binding proteins Identified By Editing) and other methods will help unravel their mode of action and splicing regulatory elements under various conditions. These new approaches are expected to provide significant new insights into the roles of SRs and splice isoforms in plants adaptation to diverse stresses.

摘要

丝氨酸/精氨酸丰富(SR)蛋白是保守的 RNA 结合蛋白,在 RNA 代谢中发挥重要作用。它们作为分子接头发挥作用,促进剪接体的组装,并调节前体 mRNA 的组成性和选择性剪接。编码 SR 蛋白和许多其他参与应激反应的蛋白质的前体 mRNA 会根据不同的应激广泛进行选择性剪接。因此,有人提出,剪接异构体的应激诱导变化有助于植物适应应激反应。然而,大多数 SR 基因及其剪接异构体在应激反应中的功能尚不清楚。缺乏简单而强大的工具阻碍了这一领域的进展。新兴技术,如 CRISPR/Cas9,通过使 SR 亚家族成员的单敲除和多敲除突变体的产生成为可能,将促进 SR 功能的研究。此外,CRISPR/Cas13 允许以组成型或组织特异性的方式靶向操纵来自 SR 和其他基因的剪接异构体,以评估单个剪接变体的功能。使用最近开发的 TRIBE(RNA 结合蛋白靶标鉴定通过编辑)和其他方法鉴定 SR 蛋白及其剪接变体的体内靶标,将有助于揭示它们在各种条件下的作用模式和剪接调控元件。这些新方法有望为 SR 和剪接异构体在植物适应各种应激中的作用提供重要的新见解。

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