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多重 CRISPR 诱变技术在水稻精氨酸/丝氨酸丰富(SR)基因家族中的应用。

Multiplex CRISPR Mutagenesis of the Serine/Arginine-Rich (SR) Gene Family in Rice.

机构信息

Laboratory for Genome Engineering and Synthetic Biology, Division of Biological Sciences, King Abdullah University of Science and Technology, Thuwal 23955-6900, Saudi Arabia.

Program in Molecular Plant Biology, Program in Cell and Molecular Biology, Department of Biology, Colorado State University, Fort Collins, CO 80523-1062, USA.

出版信息

Genes (Basel). 2019 Aug 7;10(8):596. doi: 10.3390/genes10080596.

Abstract

Plant growth responds to various environmental and developmental cues via signaling cascades that influence gene expression at the level of transcription and pre-mRNA splicing. Alternative splicing of pre-mRNA increases the coding potential of the genome from multiexon genes and regulates gene expression through multiple mechanisms. Serine/arginine-rich (SR) proteins, a conserved family of splicing factors, are the key players of alternative splicing and regulate pre-mRNA splicing under stress conditions. The rice () genome encodes 22 SR proteins categorized into six subfamilies. Three of the subfamilies are plant-specific with no mammalian orthologues, and the functions of these SR proteins are not well known. The clustered regularly interspaced short palindromic repeats (CRISPR)/CRISPR-associated protein 9 (Cas9) system is a genome engineering tool that cleaves the target DNA at specific locations directed by a guide RNA (gRNA). Recent advances in CRISPR/Cas9-mediated plant genome engineering make it possible to generate single and multiple functional knockout mutants in diverse plant species. In this study, we targeted each rice SR locus and produced single knockouts. To overcome the functional redundancy within each subfamily of SR genes, we utilized a polycistronic tRNA-gRNA multiplex targeting system and targeted all loci of each subfamily. Sanger sequencing results indicated that most of the targeted loci had knockout mutations. This study provides useful resource materials for understanding the molecular role of SR proteins in plant development and biotic and abiotic stress responses.

摘要

植物生长通过信号级联反应来响应各种环境和发育线索,从而影响转录和前体 mRNA 剪接水平的基因表达。前体 mRNA 的可变剪接增加了多外显子基因的编码潜力,并通过多种机制调节基因表达。丝氨酸/精氨酸丰富(SR)蛋白是剪接因子的一个保守家族,是可变剪接的关键因子,可调节应激条件下的前体 mRNA 剪接。水稻()基因组编码 22 种 SR 蛋白,分为六个亚家族。其中三个亚家族是植物特异性的,没有哺乳动物同源物,这些 SR 蛋白的功能尚不清楚。成簇规律间隔短回文重复(CRISPR)/CRISPR 相关蛋白 9(Cas9)系统是一种基因组工程工具,可在指导 RNA(gRNA)指导的特定位置切割靶 DNA。CRISPR/Cas9 介导的植物基因组工程的最新进展使得在不同的植物物种中产生单和多个功能缺失突变体成为可能。在这项研究中,我们针对每个水稻 SR 基因座并产生了单敲除突变体。为了克服 SR 基因家族内的功能冗余,我们利用了多顺反子 tRNA-gRNA 多重靶向系统,并靶向了每个亚家族的所有基因座。Sanger 测序结果表明,大多数靶向基因座都发生了敲除突变。这项研究为理解 SR 蛋白在植物发育以及生物和非生物胁迫响应中的分子作用提供了有用的资源材料。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/962f/6723545/582720c7b859/genes-10-00596-g001.jpg

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