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利用哺乳动物DNA序列对分子钟假说的评估。

An evaluation of the molecular clock hypothesis using mammalian DNA sequences.

作者信息

Li W H, Tanimura M, Sharp P M

机构信息

Center for Demographic and Population Genetics, University of Texas, Houston 77225.

出版信息

J Mol Evol. 1987;25(4):330-42. doi: 10.1007/BF02603118.

DOI:10.1007/BF02603118
PMID:3118047
Abstract

A statistical analysis of extensive DNA sequence data from primates, rodents, and artiodactyls clearly indicates that no global molecular clock exists in mammals. Rates of nucleotide substitution in rodents are estimated to be four to eight times higher than those in higher primates and two to four times higher than those in artiodactyls. There is strong evidence for lower substitution rates in apes and humans than in monkeys, supporting the hominoid slowdown hypothesis. There is also evidence for lower rates in humans than in apes, suggesting a further rate slowdown in the human lineage after the separation of humans from apes. By contrast, substitution rates are nearly equal in mouse and rat. These results suggest that differences in generation time or, more precisely, in the number of germline DNA replications per year are the primary cause of rate differences in mammals. Further, these differences are more in line with the neutral mutation hypothesis than if the rates are the same for short- and long-living mammals.

摘要

对来自灵长类动物、啮齿动物和偶蹄目动物的大量DNA序列数据进行的统计分析清楚地表明,哺乳动物中不存在全球分子钟。据估计,啮齿动物的核苷酸替换率比高等灵长类动物高4至8倍,比偶蹄目动物高2至4倍。有强有力的证据表明,猿类和人类的替换率低于猴子,这支持了类人猿减速假说。也有证据表明人类的替换率低于猿类,这表明人类与猿类分离后,人类谱系中的替换率进一步放缓。相比之下,小鼠和大鼠的替换率几乎相等。这些结果表明,世代时间的差异,或者更准确地说,每年生殖系DNA复制的次数差异,是哺乳动物速率差异的主要原因。此外,这些差异更符合中性突变假说,而不是短寿命和长寿命哺乳动物的速率相同的情况。

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1
An evaluation of the molecular clock hypothesis using mammalian DNA sequences.利用哺乳动物DNA序列对分子钟假说的评估。
J Mol Evol. 1987;25(4):330-42. doi: 10.1007/BF02603118.
2
Molecular phylogeny of Rodentia, Lagomorpha, Primates, Artiodactyla, and Carnivora and molecular clocks.啮齿目、兔形目、灵长目、偶蹄目和食肉目的分子系统发育与分子钟
Proc Natl Acad Sci U S A. 1990 Sep;87(17):6703-7. doi: 10.1073/pnas.87.17.6703.
3
Synonymous nucleotide substitution rates in mammalian genes: implications for the molecular clock and the relationship of mammalian orders.哺乳动物基因中的同义核苷酸替换率:对分子钟及哺乳动物目间关系的影响
Proc Natl Acad Sci U S A. 1991 Jul 15;88(14):5974-8. doi: 10.1073/pnas.88.14.5974.
4
Rates of nucleotide substitution in primates and rodents and the generation-time effect hypothesis.灵长类动物和啮齿动物的核苷酸替代率与世代时间效应假说。
Mol Phylogenet Evol. 1996 Feb;5(1):182-7. doi: 10.1006/mpev.1996.0012.
5
The molecular clock runs more slowly in man than in apes and monkeys.分子钟在人类中的运行速度比在猿类和猴类中更慢。
Nature. 1987;326(6108):93-6. doi: 10.1038/326093a0.
6
Different rates of substitution may produce different phylogenies of the eutherian mammals.不同的替代率可能会产生不同的真兽亚纲哺乳动物系统发育树。
J Mol Evol. 1991 Sep;33(3):209-15. doi: 10.1007/BF02100671.
7
Consistent variation in amino-acid substitution rate, despite uniformity of mutation rate: protein evolution in mammals is not neutral.尽管突变率一致,但氨基酸替代率存在持续变化:哺乳动物的蛋白质进化并非中性。
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Sequences of primate insulin genes support the hypothesis of a slower rate of molecular evolution in humans and apes than in monkeys.灵长类胰岛素基因序列支持这样一种假说:人类和猿类的分子进化速率比猴子慢。
Mol Biol Evol. 1992 Mar;9(2):193-203. doi: 10.1093/oxfordjournals.molbev.a040713.
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An examination of the generation-time effect on molecular evolution.对世代时间对分子进化影响的考察。
Proc Natl Acad Sci U S A. 1993 Nov 15;90(22):10676-80. doi: 10.1073/pnas.90.22.10676.
10
Synonymous and nonsynonymous rate variation in nuclear genes of mammals.哺乳动物核基因中的同义突变率和非同义突变率变异
J Mol Evol. 1998 Apr;46(4):409-18. doi: 10.1007/pl00006320.

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