Sedláček Ivo, Pantůček Roman, Holochová Pavla, Králová Stanislava, Staňková Eva, Vrbovská Veronika, Šedo Ondrej, Švec Pavel, Busse Hans-Jürgen
Czech Collection of Microorganisms, Department of Experimental Biology, Masaryk University, Brno, Czech Republic.
Section of Genetics and Molecular Biology, Department of Experimental Biology, Masaryk University, Brno, Czech Republic.
Int J Syst Evol Microbiol. 2019 Sep;69(9):2755-2761. doi: 10.1099/ijsem.0.003555.
A set of three psychrotrophic bacterial strains was isolated from different soil samples collected at the deglaciated northern part of James Ross Island (Antarctica) in 2014. All isolates were rod-shaped, Gram-stain-negative, non-motile, catalase-positive and oxidase-negative, and produced moderately slimy red-pink pigmented colonies on Reasoner's 2A (R2A) agar. A polyphasic taxonomic approach based on 16S rRNA gene sequencing, whole-genome sequencing, automated ribotyping, MALDI-TOF MS, chemotaxonomy methods and extensive biotyping using conventional tests and commercial identification kits was applied to the isolates in order to clarify their taxonomic position. Phylogenetic analysis based on the 16S rRNA gene showed that all isolates belonged to the genus with the closest relative being DSM 13606, exhibiting 98.5 % 16S rRNA gene pairwise similarity to the reference isolate P6312. Average nucleotide identity values calculated from the whole-genome sequencing data proved that P6312 represents a distinct species. The major components of the cellular fatty acid composition were summed feature 3 (C 7/C 6), C 5, summed feature 4 (C anteiso B/iso I), C anteiso and C iso. The menaquinone system of strain P6312 contained MK-7 as the major respiratory quinone. The predominant polar lipids were phosphatidylethanolamine and an unidentified phospholipid. Moderate to minor amounts of three unidentified polar lipids, four unidentified aminophospholipids, one unidentified glycolipid and one unidentified phospholipid were also present. Based on the obtained results, we propose a novel species for which the name sp. nov. is suggested, with the type strain P6312 (=CCM 8763=LMG 30612).
2014年,从詹姆斯罗斯岛(南极洲)北部冰川消退区域采集的不同土壤样本中分离出一组三株嗜冷细菌菌株。所有分离株均为杆状,革兰氏染色阴性,无运动性,过氧化氢酶阳性,氧化酶阴性,在里森纳2A(R2A)琼脂上产生中度粘稠的红粉色菌落。为了阐明这些分离株的分类地位,对其采用了基于16S rRNA基因测序、全基因组测序、自动核糖体分型、基质辅助激光解吸电离飞行时间质谱、化学分类学方法以及使用传统测试和商业鉴定试剂盒进行广泛生物分型的多相分类方法。基于16S rRNA基因的系统发育分析表明,所有分离株均属于该属,与最接近的亲缘种DSM 13606相比,与参考菌株P6312的16S rRNA基因两两相似性为98.5%。根据全基因组测序数据计算的平均核苷酸同一性值证明P6312代表一个独特的物种。细胞脂肪酸组成的主要成分是总和特征3(C7/C6)、C5、总和特征4(anteiso B/iso I)、anteiso和iso。菌株P6312的甲基萘醌系统以MK-7作为主要呼吸醌。主要的极性脂质是磷脂酰乙醇胺和一种未鉴定的磷脂。还存在少量至中等量的三种未鉴定的极性脂质、四种未鉴定的氨基磷脂、一种未鉴定的糖脂和一种未鉴定的磷脂。基于获得的结果,我们提出了一个新物种,建议命名为sp. nov.,模式菌株为P6312(=CCM 8763=LMG 30612)。