人源ST398型甲氧西林敏感金黄色葡萄球菌高毒力菌株GD487的全基因组序列
Complete Genome Sequence of GD487, a High-Virulence Strain of Human-Associated ST398 Methicillin-Susceptible Staphylococcus aureus.
作者信息
McClure Jo-Ann, Shideler Steven M, Zhang Kunyan
机构信息
Centre for Antimicrobial Resistance, Alberta Health Services/Alberta Public Laboratories/University of Calgary, Calgary, Alberta, Canada.
Department of Microbiology, Immunology and Infectious Diseases, University of Calgary, Calgary, Alberta, Canada.
出版信息
Microbiol Resour Announc. 2019 Jul 3;8(27):e00686-19. doi: 10.1128/MRA.00686-19.
Abstract
Multilocus sequence type 398 (ST398) methicillin-susceptible (MSSA) has been shown to have augmented pathogenicity in humans. However, it has not been determined whether all ST398 strains are equally virulent. We present here the genome sequence of a high-virulence ST398 MSSA strain, GD487, to explore potential insights into ST398 virulence.
摘要
多位点序列类型398（ST398）的甲氧西林敏感金黄色葡萄球菌（MSSA）已被证明在人类中具有更强的致病性。然而，尚未确定所有ST398菌株的毒力是否相同。我们在此展示高毒力ST398 MSSA菌株GD487的基因组序列，以探索对ST398毒力的潜在见解。
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本文引用的文献
1
Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads.单轮循环器：从短读长和长读长测序数据中解析细菌基因组组装结果
PLoS Comput Biol. 2017 Jun 8;13(6):e1005595. doi: 10.1371/journal.pcbi.1005595. eCollection 2017 Jun.
2
Fast and accurate de novo genome assembly from long uncorrected reads.从长的未校正读段中进行快速且准确的从头基因组组装。
Genome Res. 2017 May;27(5):737-746. doi: 10.1101/gr.214270.116. Epub 2017 Jan 18.
3
NCBI prokaryotic genome annotation pipeline.美国国立生物技术信息中心原核生物基因组注释管道
Nucleic Acids Res. 2016 Aug 19;44(14):6614-24. doi: 10.1093/nar/gkw569. Epub 2016 Jun 24.
4
Minimap and miniasm: fast mapping and de novo assembly for noisy long sequences.Minimap和miniasm：用于有噪声长序列的快速映射和从头组装。
Bioinformatics. 2016 Jul 15;32(14):2103-10. doi: 10.1093/bioinformatics/btw152. Epub 2016 Mar 19.
5
Key Role of α-Toxin in Fatal Pneumonia Caused by Staphylococcus aureus Sequence Type 398.α毒素在金黄色葡萄球菌序列型398所致致命性肺炎中的关键作用
Am J Respir Crit Care Med. 2016 Jan 15;193(2):217-20. doi: 10.1164/rccm.201506-1225LE.
6
Pilon: an integrated tool for comprehensive microbial variant detection and genome assembly improvement.Pilon：一种用于全面微生物变异检测和基因组组装改进的集成工具。
PLoS One. 2014 Nov 19;9(11):e112963. doi: 10.1371/journal.pone.0112963. eCollection 2014.
7
Methicillin-sensitive Staphylococcus aureus CC398 in intensive care unit, France.法国重症监护病房中的甲氧西林敏感金黄色葡萄球菌CC398
Emerg Infect Dis. 2014 Sep;20(9):1511-5. doi: 10.3201/eid2009.130225.
8
Risk factors for persistence of livestock-associated MRSA and environmental exposure in veal calf farmers and their family members: an observational longitudinal study.牛犊饲养员及其家庭成员中与牲畜相关的耐甲氧西林金黄色葡萄球菌（MRSA）持续存在的风险因素和环境暴露：一项观察性纵向研究。
BMJ Open. 2013 Sep 19;3(9):e003272. doi: 10.1136/bmjopen-2013-003272.
9
A Caenorhabditis elegans host model correlates with invasive disease caused by Staphylococcus aureus recovered during an outbreak in neonatal intensive care.秀丽隐杆线虫宿主模型与新生儿重症监护病房暴发期间分离的金黄色葡萄球菌引起的侵袭性疾病相关。
Can J Infect Dis Med Microbiol. 2012 Fall;23(3):130-4. doi: 10.1155/2012/543817.
10
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Clin Infect Dis. 2013 Sep;57(5):700-3. doi: 10.1093/cid/cit375. Epub 2013 May 31.
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