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五种花蝇属(双翅目:蝇科)的 hoverfly 物种的第一个线粒体基因组。

First mitochondrial genomes of five hoverfly species of the genus s (Diptera: Syrphidae).

机构信息

Royal Belgian Institute of Natural Sciences, JEMU and BopCo, Vautierstraat 29, B-1000 Brussels, Belgium.

Royal Museum for Central Africa, JEMU and BopCo, Leuvensesteenweg 13, B-3080 Tervuren, Belgium.

出版信息

Genome. 2019 Oct;62(10):677-687. doi: 10.1139/gen-2019-0009. Epub 2019 Jul 8.

DOI:10.1139/gen-2019-0009
PMID:31283887
Abstract

The hoverfly genus (Diptera, Syrphidae) contains many widespread pollinators. The majority of the species of occur in the Afrotropics and their molecular systematics still needs to be investigated. This study presents the first complete and annotated mitochondrial genomes for five species of . They were obtained by high-throughput sequencing of total genomic DNA. The total length of the mitogenomes varied between 15 757 and 16 245 base pairs. Gene composition, positions, and orientation were shared across species, and were identical to those observed for other Diptera. Phylogenetic analyses (maximum likelihood and Bayesian inference) based on the 13 protein coding and both rRNA genes suggested that the subgenus was paraphyletic with respect to the subgenus . An analysis of the phylogenetic informativeness of all protein coding and rRNA genes suggested that NADH dehydrogenase subunit 5 (nad5), cytochrome oxidase subunit 1, nad4, nad2, cytochrome , and 16S rRNA genes are the most promising mitochondrial molecular markers to result in supported phylogenetic hypotheses of the genus. In addition to the five complete mitogenomes currently available for hoverflies, the five mitogenomes published here will be useful for broader molecular phylogenetic analyses among hoverflies.

摘要

食蚜蝇属(双翅目,食蚜蝇科)包含许多广泛的传粉媒介。该属的大多数物种分布于非洲热带地区,其分子系统发育仍有待研究。本研究首次提供了 5 种食蚜蝇属物种完整注释的线粒体基因组。它们是通过高通量测序总基因组 DNA 获得的。线粒体基因组的总长度在 15757 到 16245 碱基对之间变化。基因组成、位置和方向在物种间是共享的,与其他双翅目昆虫观察到的一致。基于 13 个蛋白质编码基因和两个 rRNA 基因的系统发育分析(最大似然法和贝叶斯推断)表明,亚属相对于亚属是并系的。对所有蛋白质编码基因和 rRNA 基因的系统发育信息量分析表明,NADH 脱氢酶亚基 5(nad5)、细胞色素氧化酶亚基 1、nad4、nad2、细胞色素 c 和 16S rRNA 基因是最有希望的线粒体分子标记,可得出支持该属系统发育假说的结果。除了目前可用于食蚜蝇的 5 个完整线粒体基因组外,这里发表的 5 个线粒体基因组将有助于更广泛的食蚜蝇属分子系统发育分析。

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