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中国东北黑土中可培养类细菌的多样性及地理分布

The Diversity and Geographic Distribution of Cultivable -Like Bacteria Across Black Soils of Northeast China.

作者信息

Liu Junjie, Cui Xiao, Liu Zhuxiu, Guo Zhaokui, Yu Zhenhua, Yao Qin, Sui Yueyu, Jin Jian, Liu Xiaobing, Wang Guanghua

机构信息

Key Laboratory of Mollisols Agroecology, Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences, Harbin, China.

School of Life Sciences and Technology, Mudanjiang Normal University, Mudanjiang, China.

出版信息

Front Microbiol. 2019 Jun 21;10:1424. doi: 10.3389/fmicb.2019.01424. eCollection 2019.

Abstract

-like species are gram-positive bacteria that are ubiquitous in soils. Many of -like bacteria are demonstrated as beneficial microbes widely used in industry and agriculture. However, the knowledge related to their diversity and distribution patterns in soils is still rudimentary. In this study, we developed a combined research method of using culture-dependent and high-throughput sequencing to investigate the composition and diversity of cultivable -like bacterial communities across 26 soil samples obtained from the black soil zone in northeast China. Nearly all bacterial 16S rDNA sequences were classified into the order Bacillales. Fifteen genera were detected, with , , and being the three most abundant genera. Although more than 2,000 OTUs were obtained across all samples, 33 OTUs were confirmed as the abundant species with a relative abundance over 5% in at least one sample. Pairwise analysis showed that the diversity of -like bacterial communities were significantly and positively correlated with soil total carbon contents and soil sampling latitudes, which suggests that a latitudinal gradient diversity of -like bacterial communities exists in the black soil zone. The principal coordinates analysis revealed that the -like bacterial communities were remarkably affected by soil sampling latitudes and soil total carbon content. In general, this study demonstrated that a distinct biogeographic distribution pattern of cultivable -like bacterial communities existed in the black soil zone, which emphasizes that the strategy of local isolation and application of beneficial -like strains is rather important in black soil agriculture development.

摘要

类[细菌名称]是革兰氏阳性菌,在土壤中广泛存在。许多类[细菌名称]细菌被证明是广泛应用于工农业的有益微生物。然而,关于它们在土壤中的多样性和分布模式的知识仍然很基础。在本研究中,我们开发了一种结合依赖培养和高通量测序的研究方法,以调查从中国东北黑土区采集的26个土壤样品中可培养类[细菌名称]细菌群落的组成和多样性。几乎所有细菌16S rDNA序列都被归类到芽孢杆菌目。检测到15个属,其中[属名1]、[属名2]和[属名3]是三个最丰富的属。尽管在所有样品中获得了超过2000个操作分类单元(OTU),但有33个OTU被确认为至少在一个样品中相对丰度超过5%的优势种。成对分析表明,类[细菌名称]细菌群落的多样性与土壤总碳含量和土壤采样纬度显著正相关,这表明在黑土区存在类[细菌名称]细菌群落的纬度梯度多样性。主坐标分析表明,类[细菌名称]细菌群落受到土壤采样纬度和土壤总碳含量的显著影响。总体而言,本研究表明在黑土区存在可培养类[细菌名称]细菌群落独特的生物地理分布模式,这强调了在黑土农业发展中本地分离和应用有益类[细菌名称]菌株的策略相当重要。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9201/6598460/5e679c44686b/fmicb-10-01424-g001.jpg

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