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茶树钙调磷酸酶 B 样蛋白和钙调磷酸酶 B 样蛋白相互作用蛋白激酶家族基因的全基因组鉴定和表达分析。

Genome-Wide Identification and Expression Analysis of Calcineurin B-Like Protein and Calcineurin B-Like Protein-Interacting Protein Kinase Family Genes in Tea Plant.

机构信息

Tea Science Research Institute, College of Horticulture, Nanjing Agricultural University, Nanjing, China.

出版信息

DNA Cell Biol. 2019 Aug;38(8):824-839. doi: 10.1089/dna.2019.4697. Epub 2019 Jul 11.

DOI:10.1089/dna.2019.4697
PMID:31295023
Abstract

Tea plant is an important economic crop on a global scale. Its yield and quality are affected by abiotic stress. The calcineurin B-like protein (CBL) and CBL-interacting protein kinase (CIPK) family genes play irreplaceable roles in plant development and stress resistance. More and more CBL-CIPK genes have been identified, but a few CBL-CIPK genes have been cloned and characterized in tea plants. In this study, 7 and 18 were identified based on the tea plant genome. Physicochemical properties, phylogenetic, conserved motifs, gene structure, homologous gene network, and promoter upstream elements of these 25 genes were analyzed. Conserved motifs of these genes varied with phylogenetic tree node. From the genetic structure, members of the tea plant CIPK gene family can be divided into two types: intron rich and no intron. Many stress-related elements were found in the 2000 bp upstream of the promoter, and PlantCARE predicted that contained 30 stress-related elements. PlantPAN2 shows that contains 48 ABRELATERD1; contains 37 GT1CONSENSUS; contains 64 MYBCOREATCYCB1; contains 52 SORLIP1AT; contains 65 SURECOREATSULTR11; and contains 83 WBOXATNPR1. In addition, eight genes were selected for quantitative real-time PCR (RT-qPCR) to detect their expression profiles under high-temperature, low-temperature, salt, and drought treatments. These genes were found to be responsive to one or more abiotic stress treatments. The expression levels of , and were similar, and they were homologous to and and in Arabidopsis, which were involved in the SOS pathway. This study provides insight into the potential functions of the CsCBL and CsCIPK of tea plant.

摘要

茶树是全球范围内重要的经济作物,其产量和品质受到非生物胁迫的影响。钙调神经磷酸酶 B 样蛋白(CBL)和 CBL 相互作用蛋白激酶(CIPK)家族基因在植物发育和抗逆性方面发挥着不可替代的作用。越来越多的 CBL-CIPK 基因被鉴定出来,但在茶树中克隆和鉴定的 CBL-CIPK 基因很少。本研究基于茶树基因组,共鉴定出 7 个和 18 个 CBL-CIPK 基因。分析了这 25 个基因的理化性质、系统发育、保守基序、基因结构、同源基因网络和启动子上游元件。这些基因的保守基序随系统发育树节点而变化。从遗传结构上看,茶树 CIPK 基因家族成员可分为两类:内含子丰富和无内含子。在启动子上游 2000bp 处发现了许多与应激相关的元件,PlantCARE 预测 含有 30 个与应激相关的元件。PlantPAN2 表明 含有 48 个 ABRELATERD1; 含有 37 个 GT1CONSENSUS; 含有 64 个 MYBCOREATCYCB1; 含有 52 个 SORLIP1AT; 含有 65 个 SURECOREATSULTR11; 含有 83 个 WBOXATNPR1。此外,选择了 8 个基因进行定量实时 PCR(RT-qPCR)检测,以研究其在高温、低温、盐和干旱处理下的表达谱。结果发现这些基因对一种或多种非生物胁迫处理有响应。基因 、 、 的表达水平相似,与拟南芥中的 、 、 同源,它们参与了 SOS 途径。本研究为茶树 CsCBL 和 CsCIPK 的潜在功能提供了参考。

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