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高质量弯叶画眉草基因组为禾本科进化提供了新见解,并为提高饲草质量提供了新策略。

A high-quality genome of Eragrostis curvula grass provides insights into Poaceae evolution and supports new strategies to enhance forage quality.

机构信息

Centro de Recursos Naturales Renovables de la Zona Semiárida (CERZOS - CCT - CONICET Bahía Blanca) and Departamento de Agronomía, Universidad Nacional del Sur, Camino de la Carrindanga km 7, 8000, Bahía Blanca, Argentina.

NIAB, Huntingdon Road, Cambridge, CB3 0LE, UK.

出版信息

Sci Rep. 2019 Jul 15;9(1):10250. doi: 10.1038/s41598-019-46610-0.

Abstract

The Poaceae constitute a taxon of flowering plants (grasses) that cover almost all Earth's inhabitable range and comprises some of the genera most commonly used for human and animal nutrition. Many of these crops have been sequenced, like rice, Brachypodium, maize and, more recently, wheat. Some important members are still considered orphan crops, lacking a sequenced genome, but having important traits that make them attractive for sequencing. Among these traits is apomixis, clonal reproduction by seeds, present in some members of the Poaceae like Eragrostis curvula. A de novo, high-quality genome assembly and annotation for E. curvula have been obtained by sequencing 602 Mb of a diploid genotype using a strategy that combined long-read length sequencing with chromosome conformation capture. The scaffold N50 for this assembly was 43.41 Mb and the annotation yielded 56,469 genes. The availability of this genome assembly has allowed us to identify regions associated with forage quality and to develop strategies to sequence and assemble the complex tetraploid genotypes which harbor the apomixis control region(s). Understanding and subsequently manipulating the genetic drivers underlying apomixis could revolutionize agriculture.

摘要

禾本科植物是开花植物(草类)的一个分类群,几乎覆盖了地球所有可居住的范围,其中一些属是人类和动物营养中最常用的来源。这些作物中有许多已经被测序,如水稻、短柄草、玉米,最近还有小麦。一些重要的成员仍然被认为是无基因组图谱的孤儿作物,但它们具有重要的特征,使其成为测序的目标。这些特征之一是无融合生殖,即通过种子进行无性繁殖,存在于禾本科的某些成员中,如弯芒披碱草。通过使用结合长读长测序和染色体构象捕获的策略,对二倍体基因型进行了 602 Mb 的测序,获得了弯芒披碱草的从头、高质量基因组组装和注释。该组装的支架 N50 为 43.41 Mb,注释得到了 56469 个基因。该基因组组装的可用性使我们能够鉴定与饲料质量相关的区域,并开发用于测序和组装复杂四倍体基因型的策略,这些基因型含有无融合生殖控制区。理解并随后操纵无融合生殖的遗传驱动因素可能会彻底改变农业。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/acea/6629639/00e562e26dbb/41598_2019_46610_Fig1_HTML.jpg

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