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小分子晶体学中的辐射损伤:事实而非虚构。

Radiation damage in small-molecule crystallography: fact not fiction.

作者信息

Christensen Jeppe, Horton Peter N, Bury Charles S, Dickerson Joshua L, Taberman Helena, Garman Elspeth F, Coles Simon J

机构信息

Diamond Light Source Ltd, Diamond House, Harwell Science and Innovation Campus, Didcot, Oxfordshire OX11 0DE, UK.

National Crystallography Service, School of Chemistry, Faculty of Engineering and Physical Sciences, University of Southampton, Southampton SO17 1BJ, UK.

出版信息

IUCrJ. 2019 Jun 14;6(Pt 4):703-713. doi: 10.1107/S2052252519006948. eCollection 2019 Jul 1.

DOI:10.1107/S2052252519006948
PMID:31316814
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC6608633/
Abstract

Traditionally small-molecule crystallographers have not usually observed or recognized significant radiation damage to their samples during diffraction experiments. However, the increased flux densities provided by third-generation synchrotrons have resulted in increasing numbers of observations of this phenomenon. The diversity of types of small-molecule systems means it is not yet possible to propose a general mechanism for their radiation-induced sample decay, however characterization of the effects will permit attempts to understand and mitigate it. Here, systematic experiments are reported on the effects that sample temperature and beam attenuation have on radiation damage progression, allowing qualitative and quantitative assessment of their impact on crystals of a small-molecule test sample. To allow inter-comparison of different measurements, radiation-damage metrics (diffraction-intensity decline, resolution fall-off, scaling -factor increase) are plotted against the absorbed dose. For ease-of-dose calculations, the software developed for protein crystallography, -3, has been modified for use in small-molecule crystallography. It is intended that these initial experiments will assist in establishing protocols for small-molecule crystallographers to optimize the diffraction signal from their samples prior to the onset of the deleterious effects of radiation damage.

摘要

传统上,小分子晶体学家在衍射实验过程中通常不会观察到或认识到其样品受到显著的辐射损伤。然而,第三代同步加速器提供的通量密度增加,导致对这一现象的观测数量不断增加。小分子系统类型的多样性意味着目前还无法提出一种通用的机制来解释其辐射诱导的样品衰变,不过对这些效应的表征将有助于尝试理解和减轻这种衰变。在此,报告了关于样品温度和光束衰减对辐射损伤进展影响的系统实验,从而能够对它们对小分子测试样品晶体的影响进行定性和定量评估。为了便于不同测量之间的比较,将辐射损伤指标(衍射强度下降、分辨率降低、比例因子增加)与吸收剂量进行了绘图。为便于剂量计算,已对用于蛋白质晶体学的软件 -3 进行修改,以用于小分子晶体学。这些初步实验旨在帮助小分子晶体学家制定方案,以便在辐射损伤产生有害影响之前优化其样品的衍射信号。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3eba/6608633/2483f358efda/m-06-00703-fig8.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3eba/6608633/3c7f0994e641/m-06-00703-fig1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3eba/6608633/3715bc872b8e/m-06-00703-fig2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3eba/6608633/32eb121fe84a/m-06-00703-fig4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3eba/6608633/a810690cdf03/m-06-00703-fig5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3eba/6608633/8886ac238793/m-06-00703-fig6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3eba/6608633/8bdc12fcd6ce/m-06-00703-fig7.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3eba/6608633/2483f358efda/m-06-00703-fig8.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3eba/6608633/3c7f0994e641/m-06-00703-fig1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3eba/6608633/3715bc872b8e/m-06-00703-fig2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3eba/6608633/32eb121fe84a/m-06-00703-fig4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3eba/6608633/a810690cdf03/m-06-00703-fig5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3eba/6608633/8886ac238793/m-06-00703-fig6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3eba/6608633/8bdc12fcd6ce/m-06-00703-fig7.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3eba/6608633/2483f358efda/m-06-00703-fig8.jpg

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