Hitch Thomas C A, Clavel Thomas
Functional Microbiome Research Group, Institute of Medical Microbiology, University Hospital of RWTH Aachen, Aachen, Germany.
PeerJ. 2019 Jul 8;7:e7249. doi: 10.7717/peerj.7249. eCollection 2019.
Bacterial lipolytic enzymes represent an important class of proteins: they provide their host species with access to additional resources and have multiple applications within the biotechnology sector. Since the formalisation of lipolytic enzymes into families and subfamilies, advances in molecular biology have led to the discovery of lipolytic enzymes unable to be classified via the existing system. Utilising sequence-based comparison methods, we have integrated these novel families within the classification system so that it now consists of 35 families and 11 true lipase subfamilies. Representative sequences for each family and subfamily have been defined as well as methodology for accurate comparison of novel sequences against the reference proteins, facilitating the future assignment of novel proteins. Both the code and protein sequences required for integration of additional families are available at: https://github.com/thh32/Lipase_reclassification.
它们为宿主物种提供了获取额外资源的途径,并且在生物技术领域有多种应用。自从脂肪分解酶被正式划分为家族和亚家族以来,分子生物学的进展导致发现了无法通过现有系统分类的脂肪分解酶。利用基于序列的比较方法,我们已将这些新家族整合到分类系统中,使其现在由35个家族和11个真正的脂肪酶亚家族组成。已定义了每个家族和亚家族的代表性序列以及将新序列与参考蛋白进行准确比较的方法,便于未来对新蛋白进行分类。整合其他家族所需的代码和蛋白质序列可在以下网址获取:https://github.com/thh32/Lipase_reclassification 。