Hasan Mahmudul, Islam Shiful, Chakraborty Sourav, Mustafa Abu Hasnat, Azim Kazi Faizul, Joy Ziaul Faruque, Hossain Md Nazmul, Foysal Shakhawat Hossain, Hasan Md Nazmul
Faculty of Biotechnology and Genetic Engineering, Sylhet Agricultural University, Sylhet, Bangladesh.
Department of Pharmaceuticals and Industrial Biotechnology, Sylhet Agricultural University, Sylhet, Bangladesh.
J Biomol Struct Dyn. 2020 Jul;38(10):2898-2915. doi: 10.1080/07391102.2019.1647286. Epub 2019 Aug 12.
Herpes simplex virus type 1 (HSV-1) and 2 (HSV-2) cause a variety of infections including oral-facial infections, genital herpes, herpes keratitis, cutaneous infection and so on. To date, FDA-approved licensed HSV vaccine is not available yet. Hence, the study was conducted to identify and characterize an effective epitope based polyvalent vaccine against both types of Herpes Simplex Virus. The selected proteins were retrieved from ViralZone and assessed to design highly antigenic epitopes by binding analyses of the peptides with MHC class-I and class-II molecules, antigenicity screening, transmembrane topology screening, allergenicity and toxicity assessment, population coverage analysis and molecular docking approach. The final vaccine was constructed by the combination of top CTL, HTL and BCL epitopes from each protein along with suitable adjuvant and linkers. Physicochemical and secondary structure analysis, disulfide engineering, molecular dynamic simulation and codon adaptation were further employed to develop a unique multi-epitope peptide vaccine. Docking analysis of the refined vaccine structure with different MHC molecules and human immune TLR-2 receptor demonstrated higher interaction. Complexed structure of the modeled vaccine and TLR-2 showed minimal deformability at molecular level. Moreover, translational potency and microbial expression of the modeled vaccine was analyzed with pET28a(+) vector for strain K12 and the vaccine constructs had no similarity with entire human proteome. The study enabled design of a novel chimeric polyvalent vaccine to confer broad range immunity against both HSV serotypes. However, further wet lab based research using model animals are highly recommended to experimentally validate our findings.Communicated by Ramaswamy H. Sarma.
1型单纯疱疹病毒(HSV-1)和2型单纯疱疹病毒(HSV-2)可引起多种感染,包括口腔面部感染、生殖器疱疹、疱疹性角膜炎、皮肤感染等。迄今为止,尚无美国食品药品监督管理局(FDA)批准的HSV疫苗。因此,开展该研究以鉴定和表征一种有效的基于表位的多价疫苗,用于对抗两种类型的单纯疱疹病毒。从ViralZone数据库中检索选定的蛋白质,并通过肽与MHC-I类和II类分子的结合分析、抗原性筛选、跨膜拓扑结构筛选、致敏性和毒性评估、人群覆盖率分析以及分子对接方法来评估,以设计高度抗原性的表位。最终疫苗是通过将每种蛋白质的顶级细胞毒性T淋巴细胞(CTL)、辅助性T淋巴细胞(HTL)和B细胞表位(BCL)与合适的佐剂和连接子组合而成。进一步采用物理化学和二级结构分析、二硫键工程、分子动力学模拟和密码子优化来开发一种独特的多表位肽疫苗。精制疫苗结构与不同MHC分子和人类免疫TLR-2受体的对接分析显示出更高的相互作用。模拟疫苗与TLR-2的复合结构在分子水平上显示出最小的变形性。此外,用pET28a(+)载体对菌株K12分析模拟疫苗的翻译效力和微生物表达,并且疫苗构建体与整个人类蛋白质组没有相似性。该研究能够设计一种新型嵌合多价疫苗,以赋予针对两种HSV血清型的广泛免疫力。然而,强烈建议进一步使用模式动物进行基于湿实验室的研究,以通过实验验证我们的发现。由拉马斯瓦米·H·萨尔马传达。