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微生物群落的特定位置代谢探测和宏基因组学揭示了高温下保守的中心碳代谢网络活动。

Position-Specific Metabolic Probing and Metagenomics of Microbial Communities Reveal Conserved Central Carbon Metabolic Network Activities at High Temperatures.

作者信息

Thomas Scott C, Tamadonfar Kevin O, Seymour Cale O, Lai Dengxun, Dodsworth Jeremy A, Murugapiran Senthil K, Eloe-Fadrosh Emiley A, Dijkstra Paul, Hedlund Brian P

机构信息

School of Life Sciences, University of Nevada, Las Vegas, NV, United States.

Department of Biology, California State University, San Bernardino, CA, United States.

出版信息

Front Microbiol. 2019 Jul 5;10:1427. doi: 10.3389/fmicb.2019.01427. eCollection 2019.

Abstract

Temperature is a primary driver of microbial community composition and taxonomic diversity; however, it is unclear to what extent temperature affects characteristics of central carbon metabolic pathways (CCMPs) at the community level. In this study, 16S rRNA gene amplicon and metagenome sequencing were combined with C-labeled metabolite probing of the CCMPs to assess community carbon metabolism along a temperature gradient (60-95°C) in Great Boiling Spring, NV. 16S rRNA gene amplicon diversity was inversely proportional to temperature, and were dominant at higher temperatures. KO richness and diversity were also inversely proportional to temperature, yet CCMP genes were similarly represented across the temperature gradient and many individual metagenome-assembled genomes had complete pathways. In contrast, genes encoding cellulosomes and many genes involved in plant matter degradation and photosynthesis were absent at higher temperatures. C-CO production from labeled isotopomer pairs of glucose, pyruvate, and acetate suggested lower relative oxidative pentose phosphate pathway activity and/or fermentation at 60°C, and a stable or decreased maintenance energy demand at higher temperatures. Catabolism of C-labeled citrate, succinate, L-alanine, L-serine, and L-cysteine was observed at 85°C, demonstrating broad heterotrophic activity and confirming functioning of the TCA cycle. Together, these results suggest that temperature-driven losses in biodiversity and gene content in geothermal systems may not alter CCMP function or maintenance energy demands at a community level.

摘要

温度是微生物群落组成和分类多样性的主要驱动因素;然而,温度在多大程度上影响群落水平上的中心碳代谢途径(CCMPs)的特征尚不清楚。在本研究中,将16S rRNA基因扩增子和宏基因组测序与CCMPs的C标记代谢物探测相结合,以评估内华达州大沸腾泉沿温度梯度(60-95°C)的群落碳代谢。16S rRNA基因扩增子多样性与温度成反比,且在较高温度下占主导地位。KO丰度和多样性也与温度成反比,但CCMP基因在整个温度梯度上的代表性相似,许多单个宏基因组组装基因组具有完整的途径。相比之下,编码纤维小体的基因以及许多参与植物物质降解和光合作用的基因在较高温度下不存在。来自葡萄糖、丙酮酸和乙酸盐的标记同位素对的C-CO产生表明,在60°C时相对氧化戊糖磷酸途径活性较低和/或发酵,而在较高温度下维持能量需求稳定或降低。在85°C观察到C标记的柠檬酸盐、琥珀酸盐、L-丙氨酸、L-丝氨酸和L-半胱氨酸的分解代谢,表明广泛的异养活性并证实了三羧酸循环的功能。总之,这些结果表明,地热系统中温度驱动的生物多样性和基因含量损失可能不会在群落水平上改变CCMP功能或维持能量需求。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ef63/6624737/cb94760f8165/fmicb-10-01427-g0001.jpg

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