• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利：CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法，用中文像聊天一样搜索，搜遍4000万医学文献。AI智能推荐，让科研检索更轻松。

立即免费搜索

文件翻译

保留排版，准确专业，支持PDF/Word/PPT等文件格式，支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述，25分钟生成高质量综述，智能提取关键信息，辅助科研写作。

立即免费体验

陆地植物 TCP 转录因子基因家族的进化和比较表达分析。

Evolutionary and Comparative Expression Analyses of TCP Transcription Factor Gene Family in Land Plants.

机构信息

College of Agronomy and Biotechnology, Southwest University, Chongqing 400716, China.

Academy of Agricultural Sciences, Southwest University, Chongqing 400716, China.

出版信息

Int J Mol Sci. 2019 Jul 23;20(14):3591. doi: 10.3390/ijms20143591.

DOI:10.3390/ijms20143591
PMID:31340456
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC6679135/
Abstract

The plant-specific Teosinte-branched 1/Cycloidea/Proliferating (TCP) transcription factor genes are involved in plants' development, hormonal pathways, and stress response but their evolutionary history is uncertain. The genome-wide analysis performed here for 47 plant species revealed 535 TCP candidates in terrestrial plants and none in aquatic plants, and that TCP family genes originated early in the history of land plants. Phylogenetic analysis divided the candidate genes into Classes I and II, and Class II was further divided into CYCLOIDEA (CYC) and CINCINNATA (CIN) clades; CYC is more recent and originated from CIN in angiosperms. Protein architecture, intron pattern, and sequence characteristics were conserved in each class or clade supporting this classification. The two classes significantly expanded through whole-genome duplication during evolution. Expression analysis revealed the conserved expression of TCP genes from lower to higher plants. The expression patterns of Class I and CIN genes in different stages of the same tissue revealed their function in plant development and their opposite effects in the same biological process. Interaction network analysis showed that TCP proteins tend to form protein complexes, and their interaction networks were conserved during evolution. These results contribute to further functional studies on TCP family genes.

摘要

植物特有的分支 1/环化蛋白/增殖 (TCP) 转录因子基因参与植物的发育、激素途径和应激反应，但它们的进化历史尚不确定。这里对 47 种植物进行的全基因组分析显示，陆地植物中有 535 个 TCP 候选基因，而水生植物中没有，并且 TCP 家族基因起源于陆地植物的早期。系统发育分析将候选基因分为 I 类和 II 类，II 类进一步分为环化蛋白 (CYC) 和 CINNATA (CIN) 分支；在被子植物中，CYC 是较新的，起源于 CIN。每个类或分支中的蛋白质结构、内含子模式和序列特征都保守，支持这种分类。这两个类在进化过程中通过全基因组复制显著扩张。表达分析显示 TCP 基因从低等植物到高等植物的保守表达。同一组织不同阶段 I 类和 CIN 基因的表达模式揭示了它们在植物发育中的功能及其在同一生物过程中的相反作用。互作网络分析表明，TCP 蛋白倾向于形成蛋白质复合物，并且它们在进化过程中的互作网络是保守的。这些结果有助于进一步研究 TCP 家族基因的功能。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b946/6679135/8931005ec8cd/ijms-20-03591-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b946/6679135/1d410e652b6c/ijms-20-03591-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b946/6679135/b81e2a44f636/ijms-20-03591-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b946/6679135/4aafa7aa3b08/ijms-20-03591-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b946/6679135/a8d18c0e609d/ijms-20-03591-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b946/6679135/6de8a68b04b8/ijms-20-03591-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b946/6679135/8d99b87c5288/ijms-20-03591-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b946/6679135/8931005ec8cd/ijms-20-03591-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b946/6679135/1d410e652b6c/ijms-20-03591-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b946/6679135/b81e2a44f636/ijms-20-03591-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b946/6679135/4aafa7aa3b08/ijms-20-03591-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b946/6679135/a8d18c0e609d/ijms-20-03591-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b946/6679135/6de8a68b04b8/ijms-20-03591-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b946/6679135/8d99b87c5288/ijms-20-03591-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b946/6679135/8931005ec8cd/ijms-20-03591-g007.jpg

相似文献

1
Evolutionary and Comparative Expression Analyses of TCP Transcription Factor Gene Family in Land Plants.陆地植物 TCP 转录因子基因家族的进化和比较表达分析。
Int J Mol Sci. 2019 Jul 23;20(14):3591. doi: 10.3390/ijms20143591.
2
Leaf expansion in Arabidopsis is controlled by a TCP-NGA regulatory module likely conserved in distantly related species.拟南芥叶片的伸展受 TCP-NGA 调控模块的控制，该模块可能在亲缘关系较远的物种中保守。
Physiol Plant. 2015 Sep;155(1):21-32. doi: 10.1111/ppl.12327. Epub 2015 Feb 28.
3
Genome-wide classification and expression analysis of MYB transcription factor families in rice and Arabidopsis.在水稻和拟南芥中 MYB 转录因子家族的全基因组分类和表达分析。
BMC Genomics. 2012 Oct 10;13:544. doi: 10.1186/1471-2164-13-544.
4
Identification, cloning and characterization of the tomato TCP transcription factor family.番茄TCP转录因子家族的鉴定、克隆及特性分析
BMC Plant Biol. 2014 Jun 6;14:157. doi: 10.1186/1471-2229-14-157.
5
Insights into the evolution and diversification of the AT-hook Motif Nuclear Localized gene family in land plants.陆地植物中AT钩基序核定位基因家族的进化与多样化研究
BMC Plant Biol. 2014 Oct 14;14:266. doi: 10.1186/s12870-014-0266-7.
6
Genomewide analysis of TCP transcription factor gene family in Malus domestica.苹果属植物TCP转录因子基因家族的全基因组分析
J Genet. 2014 Dec;93(3):733-46. doi: 10.1007/s12041-014-0446-0.
7
Genomic survey of TCP transcription factors in plants: Phylogenomics, evolution and their biology.植物中TCP转录因子的基因组学调查：系统发育基因组学、进化及其生物学特性
Front Genet. 2022 Nov 9;13:1060546. doi: 10.3389/fgene.2022.1060546. eCollection 2022.
8
Genome-Wide Analysis of the Transcription Factor Genes in Lindl.林氏车前基因组范围的转录因子基因分析
Int J Mol Sci. 2021 Sep 24;22(19):10269. doi: 10.3390/ijms221910269.
9
Evolution of the class IV HD-zip gene family in streptophytes.厚壁菌纲 IV 类 HD-zip 基因家族在木贼门植物中的进化。
Mol Biol Evol. 2013 Oct;30(10):2347-65. doi: 10.1093/molbev/mst132. Epub 2013 Jul 27.
10
Evolution and diversification of the CYC/TB1 gene family in Asteraceae--a comparative study in Gerbera (Mutisieae) and sunflower (Heliantheae).植物科 CYC/TB1 基因家族的进化和多样化——矮牵牛属（千里光族）和向日葵属（向日葵族）的比较研究。
Mol Biol Evol. 2012 Apr;29(4):1155-66. doi: 10.1093/molbev/msr283. Epub 2011 Nov 18.

引用本文的文献

1
Evolution and comparison of the expression of TCP genes in the benincaseae and cucurbiteae tribes.豆科云实族和葫芦科南瓜族中TCP基因表达的进化与比较。
Sci Rep. 2025 May 3;15(1):15470. doi: 10.1038/s41598-025-99296-y.
2
Genome-wide identification and functional analyses of the TCP gene family in Carthamus tinctorius L.红花TCP基因家族的全基因组鉴定与功能分析
Sci Rep. 2025 Apr 15;15(1):12970. doi: 10.1038/s41598-025-97743-4.
3
Identification and expression responses of TCP gene family in under abiotic stress.非生物胁迫下TCP基因家族的鉴定及表达响应

本文引用的文献

1
A Conserved Oomycete CRN Effector Targets Tomato TCP14-2 to Enhance Virulence.一种保守的卵菌 CRN 效应子靶向番茄 TCP14-2 以增强毒力。
Mol Plant Microbe Interact. 2021 Mar;34(3):309-318. doi: 10.1094/MPMI-06-20-0172-R. Epub 2021 Mar 3.
2
Genome-Wide Identification and Expression Profiling of the TCP Family Genes in Spike and Grain Development of Wheat ( L.).小麦（L.）穗部和籽粒发育过程中TCP家族基因的全基因组鉴定与表达分析
Front Plant Sci. 2018 Sep 10;9:1282. doi: 10.3389/fpls.2018.01282. eCollection 2018.
3
Genome-wide identification and expression analyses of TCP transcription factor genes in Gossypium barbadense.
Front Plant Sci. 2025 Mar 6;16:1499244. doi: 10.3389/fpls.2025.1499244. eCollection 2025.
4
Genome-wide identification and analysis of phosphate utilization related genes (PURs) reveal their roles involved in low phosphate responses in Brassica napus L.全基因组范围内对磷利用相关基因（PURs）的鉴定与分析揭示了它们在甘蓝型油菜低磷响应中的作用。
BMC Plant Biol. 2025 Mar 13;25(1):326. doi: 10.1186/s12870-025-06315-1.
5
Comprehensive Analysis of the Gene Family and Its Expression Under UV-B Radiation in Bat.蝙蝠基因家族及其在UV-B辐射下的表达综合分析
Int J Mol Sci. 2024 Dec 27;26(1):159. doi: 10.3390/ijms26010159.
6
Evolution and Functional Dynamics of TCP Transcription Factor Gene Family in Passion Fruit ().西番莲TCP转录因子基因家族的进化与功能动态（）
Plants (Basel). 2024 Sep 13;13(18):2568. doi: 10.3390/plants13182568.
7
Identification and characterization of the RcTCP gene family and its expression in response to abiotic stresses in castor bean.鉴定和描述蓖麻 RcTCP 基因家族及其对非生物胁迫的表达。
BMC Genomics. 2024 Jul 4;25(1):670. doi: 10.1186/s12864-024-10347-6.
8
Genome-wide analysis and expression profile of gene family under drought and salinity stress condition in cowpea ( (L.) Walp.).豇豆（(L.) Walp.）在干旱和盐胁迫条件下基因家族的全基因组分析及表达谱
3 Biotech. 2024 May;14(5):138. doi: 10.1007/s13205-024-03976-x. Epub 2024 Apr 26.
9
Genome-Wide Analysis of the Transcription Factor Gene Family in Pepper ( L.).辣椒（L.）转录因子基因家族的全基因组分析
Plants (Basel). 2024 Feb 26;13(5):641. doi: 10.3390/plants13050641.
10
Genome-wide molecular evolution analysis of the GRF and GIF gene families in Plantae (Archaeplastida).植物（古生菌域）中 GRF 和 GIF 基因家族的全基因组分子进化分析。
BMC Genomics. 2024 Jan 18;25(1):74. doi: 10.1186/s12864-024-10006-w.
在海岛棉中全基因组鉴定和 TCP 转录因子基因的表达分析。
Sci Rep. 2018 Sep 28;8(1):14526. doi: 10.1038/s41598-018-32626-5.
4
Alterations of plant architecture and phase transition by the phytoplasma virulence factor SAP11.植原体毒力因子 SAP11 引起的植物形态结构和阶段转变的改变。
J Exp Bot. 2018 Nov 26;69(22):5389-5401. doi: 10.1093/jxb/ery318.
5
Phytoplasma effector SWP1 induces witches' broom symptom by destabilizing the TCP transcription factor BRANCHED1.植原体效应因子 SWP1 通过使 TCP 转录因子 BRANCHED1 失稳来诱导丛枝病症状。
Mol Plant Pathol. 2018 Dec;19(12):2623-2634. doi: 10.1111/mpp.12733. Epub 2018 Oct 24.
6
Discovering Structural Motifs in miRNA Precursors from the Kingdom.从 王国 miRNA 前体中发现结构基序。
Molecules. 2018 Jun 6;23(6):1367. doi: 10.3390/molecules23061367.
7
psRNATarget: a plant small RNA target analysis server (2017 release).psRNATarget：一个植物小 RNA 靶标分析服务器（2017 年版）。
Nucleic Acids Res. 2018 Jul 2;46(W1):W49-W54. doi: 10.1093/nar/gky316.
8
TCP Transcription Factors Regulate Shade Avoidance via Directly Mediating the Expression of Both s and Auxin Biosynthetic Genes.TCP 转录因子通过直接介导 s 和生长素生物合成基因的表达来调节避荫反应。
Plant Physiol. 2018 Feb;176(2):1850-1861. doi: 10.1104/pp.17.01566. Epub 2017 Dec 18.
9
Role of Tulipa gesneriana TEOSINTE BRANCHED1 (TgTB1) in the control of axillary bud outgrowth in bulbs.百合 TEOSINTE BRANCHED1（TgTB1）在鳞茎侧芽伸长中的作用。
Plant Reprod. 2018 Jun;31(2):145-157. doi: 10.1007/s00497-017-0316-z. Epub 2017 Dec 7.
10
The TCP4 transcription factor regulates trichome cell differentiation by directly activating GLABROUS INFLORESCENCE STEMS in Arabidopsis thaliana.TCP4 转录因子通过直接激活拟南芥 GLABROUS INFLORESCENCE STEMS 来调节毛状体细胞分化。
Plant J. 2018 Jan;93(2):259-269. doi: 10.1111/tpj.13772. Epub 2017 Dec 20.