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蝙蝠基因家族及其在UV-B辐射下的表达综合分析

Comprehensive Analysis of the Gene Family and Its Expression Under UV-B Radiation in Bat.

作者信息

Liu Ziliang, Zhao Jiaang, Xiao Ying, Li Caijuan, Miao Rong, Chen Sijin, Zhang Dan, Zhou Xiangyan, Li Mengfei

机构信息

College of Life Science and Technology, Gansu Agricultural University, Lanzhou 730070, China.

State Key Laboratory of Aridland Crop Science, Gansu Agricultural University, Lanzhou 730070, China.

出版信息

Int J Mol Sci. 2024 Dec 27;26(1):159. doi: 10.3390/ijms26010159.

Abstract

TCP is a plant-specific transcription factor that plays an important role in plant growth and development. In this study, we used bioinformatics to identify the entire genome of the gene family in Bat, and we analyzed the expression characteristics of genes under UV-B radiation using qRT-PCR. The results were as follows: (1) 24 members of the gene family were identified in , evenly distributed on its 24 chromosomes. (2) The genes contained 0-4 introns and 0-5 exons. (3) The genes were phylogenetically divided into three subfamilies-PCF, CIN, and CYC/TB1, with 14, 9, and 1 GiTCP proteins, respectively. (4) A covariance analysis showed that two pairs of genes underwent a fragmentary duplication event. (5) A cis-element analysis showed that the cis-responsive elements of the genes' promoter regions were mainly comprised of light-responsive, stress-responsive, hormone-regulated, growth and development, and metabolic-regulated elements. (6) A protein network interaction analysis revealed a total of 14 functional molecules of TCPs and 8 potential interacting proteins directly related to GiTCP proteins. (7) GO annotation showed that the genes were mainly enriched in BP, CC, and MF groups and had corresponding functions. (8) RNA-seq and qRT-PCR further indicated that , , , , , , , and were up- or down-regulated in after UV-B radiation, demonstrating that these genes responded to UV-B radiation in . (9) Subcellular localization analysis showed that the GiTCP8 protein was localized in the nucleus. The results of this study provide a basis for further exploration of the function of the gene family in the growth and development of .

摘要

TCP是一种植物特有的转录因子,在植物生长发育中起重要作用。在本研究中,我们利用生物信息学鉴定了蝙蝠草中该基因家族的全基因组,并使用qRT-PCR分析了紫外线-B辐射下基因的表达特征。结果如下:(1)在蝙蝠草中鉴定出该基因家族的24个成员,均匀分布在其24条染色体上。(2)这些基因含有0至4个内含子和0至5个外显子。(3)这些基因在系统发育上分为三个亚家族——PCF、CIN和CYC/TB1,分别有14、9和1个GiTCP蛋白。(4)共线性分析表明,有两对基因经历了片段重复事件。(5)顺式元件分析表明,这些基因启动子区域的顺式响应元件主要由光响应、胁迫响应、激素调节、生长发育和代谢调节元件组成。(6)蛋白质网络相互作用分析显示,共有14个TCP功能分子和8个与GiTCP蛋白直接相关的潜在相互作用蛋白。(7)GO注释表明,这些基因主要富集在BP(生物学过程)、CC(细胞组分)和MF(分子功能)组中,并具有相应功能。(8)RNA-seq和qRT-PCR进一步表明,紫外线-B辐射后,蝙蝠草中的GiTCP1、GiTCP2、GiTCP3、GiTCP4、GiTCP5、GiTCP6、GiTCP7、GiTCP9和GiTCP10基因上调或下调,表明这些基因对蝙蝠草中的紫外线-B辐射有响应。(9)亚细胞定位分析表明,GiTCP8蛋白定位于细胞核。本研究结果为进一步探究该基因家族在蝙蝠草生长发育中的功能提供了依据。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dda3/11719519/4d8d33c50be6/ijms-26-00159-g001.jpg

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