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细菌光致变色叶绿素的丙酸侧链的作用。

Role of the Propionic Side Chains for the Photoconversion of Bacterial Phytochromes.

机构信息

Technische Universität Berlin , Institut für Chemie , Sekr. PC14, Straße des 17. Juni 135 , D-10623 Berlin , Germany.

Humboldt Universität zu Berlin , Institut für Biologie, Biophysikalische Chemie , Invalidenstraße 42 , D-10115 Berlin , Germany.

出版信息

Biochemistry. 2019 Aug 20;58(33):3504-3519. doi: 10.1021/acs.biochem.9b00526. Epub 2019 Aug 6.

DOI:10.1021/acs.biochem.9b00526
PMID:31348653
Abstract

Bacteriophytochromes harboring a biliverdin IXα (BV) chromophore undergo photoinduced reaction cascades to switch between physiologically inactive and active states. Employing vibrational spectroscopic and computational methods, we analyzed the role of propionic substituents of BV in the transformations between parent states Pr and Pfr in prototypical (Agp1) and bathy (Agp2) phytochromes from . Both proteins form adducts with BV monoesters (BVM), esterified at propionic side chain (Ps) or (Ps), but in each case, only one monoester adduct is reactive. In the reactive Agp2-BVM- complex (esterified at ring ), the Pfr dark state displays the structural properties characteristic of bathy phytochromes, including a protonated Ps. As in native Agp2, Ps is deprotonated in the final step of the Pfr phototransformation. However, the concomitant α-helix/β-sheet secondary structure change of the tongue is blocked at the stage of unfolding of the coiled loop region. This finding and the shift of the tautomeric equilibrium of BVM toward the enol form are attributed to the drastic changes in the electrostatic potential. The calculations further suggest that deprotonation of Ps and the protonation state of His278 control the reactivity of the enol tautomer, thereby accounting for the extraordinarily slow thermal reversion. Although strong perturbations of the electrostatic potential are also found for Agp1-BVM, the consequences for the Pr-to-Pfr phototransformation are less severe. Specifically, the structural transition of the tongue is not impaired and thermal reversion is even accelerated. The different response of Agp1 and Agp2 to monoesterification of BV points to different photoconversion mechanisms.

摘要

细菌视紫红质含有胆绿素 IXα (BV) 发色团,经历光诱导反应级联,在生理上不活跃和活跃状态之间切换。我们采用振动光谱和计算方法分析了 BV 中丙酸取代基在原型 (Agp1) 和深 (Agp2) 藻胆体中的母态 Pr 和 Pfr 之间转变中的作用。这两种蛋白质都与 BV 单酯 (BVM) 形成加合物,在丙酸侧链的位置 (Ps) 或 (Ps) 处酯化,但在每种情况下,只有一种单酯加合物是反应性的。在反应性 Agp2-BVM- 配合物(在环上酯化)中,Pfr 暗态显示出深藻胆体的结构特性,包括质子化的 Ps。与天然 Agp2 一样,Ps 在 Pfr 光转化的最后一步中去质子化。然而,舌的α-螺旋/β-折叠二级结构变化在卷曲环区域展开的阶段被阻断。这一发现以及 BVM 的互变异构平衡向烯醇形式的移动归因于静电势的剧烈变化。计算进一步表明,Ps 的去质子化和 His278 的质子化状态控制着烯醇互变异构体的反应性,从而解释了异常缓慢的热反转。尽管在 Agp1-BVM 中也发现了静电势的强烈扰动,但对 Pr 到 Pfr 光转化的影响不那么严重。具体而言,舌的结构转换没有受到损害,热反转甚至加速。Agp1 和 Agp2 对 BV 单酯化的不同反应表明了不同的光转化机制。

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