• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

理解电子供体在 Tsrm 催化的反应中的作用,Tsrm 是一种钴胺素依赖的自由基 S-腺苷甲硫氨酸甲基转移酶。

Understanding the role of electron donors in the reaction catalyzed by Tsrm, a cobalamin-dependent radical S-adenosylmethionine methylase.

机构信息

Department of Biochemistry and Molecular Biology, The Pennsylvania State University, University Park, PA, 16802, USA.

Department of Chemistry, The Pennsylvania State University, University Park, PA, 16802, USA.

出版信息

J Biol Inorg Chem. 2019 Sep;24(6):831-839. doi: 10.1007/s00775-019-01689-8. Epub 2019 Jul 26.

DOI:10.1007/s00775-019-01689-8
PMID:31350635
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7061315/
Abstract

The cobalamin-dependent radical S-adenosylmethionine (SAM) enzyme TsrM catalyzes the methylation of C2 of L-tryptophan to form 2-methyltryptophan during the biosynthesis of thiostrepton A. Although TsrM is a member of the radical SAM superfamily, unlike all other annotated members, it does not catalyze a reductive cleavage of SAM to a 5'-deoxyadenosyl 5'-radical intermediate. In fact, it has been proposed that TsrM catalyzes its reaction through two polar nucleophilic displacements, with its cobalamin cofactor cycling directly between methylcobalamin (MeCbl) and cob(I)alamin. Nevertheless, the enzyme has been stated to require the action of a reductant, which can be satisfied by dithiothreitol. By contrast, all other annotated RS enzymes require a reductant that exhibits a much lower reduction potential, which is necessary for the reductive cleavage of SAM. Herein, we show that TsrM can catalyze multiple turnovers in the absence of any reducing agent, but only when it is pre-loaded with MeCbl. When hydroxocobalamin (OHCbl) or cob(II)alamin is bound to TsrM, a reductant is required to convert it to cob(I)alamin, which can acquire a methyl group directly from SAM. Our studies suggest that TsrM uses an external reductant to prime its reaction by converting bound OHCbl or cob(II)alamin to MeCbl, and to regenerate the MeCbl form of the cofactor upon adventitious oxidation of the cob(I)alamin intermediate to cob(II)alamin.

摘要

钴胺素依赖的自由基 S-腺苷甲硫氨酸(SAM)酶 TsrM 在硫链丝菌素 A 的生物合成过程中催化 L-色氨酸的 C2 位甲基化,形成 2-甲基色氨酸。尽管 TsrM 是自由基 SAM 超家族的成员,但与所有其他注释成员不同,它不会催化 SAM 的还原裂解形成 5'-脱氧腺苷 5'-自由基中间体。事实上,有人提出 TsrM 通过两次极性亲核取代来催化其反应,其钴胺素辅因子在甲基钴胺素(MeCbl)和 cob(I)alamin 之间直接循环。然而,该酶已被证明需要还原剂的作用,还原剂可以由二硫苏糖醇(DTT)来满足。相比之下,所有其他注释的 RS 酶都需要一种还原电势低得多的还原剂,这对于 SAM 的还原裂解是必要的。在此,我们表明 TsrM 可以在没有任何还原剂的情况下催化多次周转,但前提是它预先加载了 MeCbl。当羟钴胺素(OHCbl)或 cob(II)alamin 与 TsrM 结合时,需要还原剂将其转化为 cob(I)alamin,后者可以直接从 SAM 获得一个甲基。我们的研究表明,TsrM 使用外部还原剂通过将结合的 OHCbl 或 cob(II)alamin 转化为 MeCbl 来启动其反应,并在 cob(I)alamin 中间体偶然氧化为 cob(II)alamin 时,再生辅因子的 MeCbl 形式。

相似文献

1
Understanding the role of electron donors in the reaction catalyzed by Tsrm, a cobalamin-dependent radical S-adenosylmethionine methylase.理解电子供体在 Tsrm 催化的反应中的作用,Tsrm 是一种钴胺素依赖的自由基 S-腺苷甲硫氨酸甲基转移酶。
J Biol Inorg Chem. 2019 Sep;24(6):831-839. doi: 10.1007/s00775-019-01689-8. Epub 2019 Jul 26.
2
Efficient methylation of C2 in l-tryptophan by the cobalamin-dependent radical -adenosylmethionine methylase TsrM requires an unmodified N1 amine.钴胺素依赖性自由基-腺苷甲硫氨酸甲基转移酶TsrM对L-色氨酸中C2的高效甲基化需要未修饰的N1胺。
J Biol Chem. 2017 Sep 15;292(37):15456-15467. doi: 10.1074/jbc.M117.778548. Epub 2017 Jul 26.
3
Spectroscopic and Electrochemical Characterization of the Iron-Sulfur and Cobalamin Cofactors of TsrM, an Unusual Radical S-Adenosylmethionine Methylase.TsrM的铁硫和钴胺素辅因子的光谱和电化学表征,TsrM是一种不寻常的自由基S-腺苷甲硫氨酸甲基转移酶。
J Am Chem Soc. 2016 Mar 16;138(10):3416-26. doi: 10.1021/jacs.5b12592. Epub 2016 Mar 3.
4
Methionine synthase exists in two distinct conformations that differ in reactivity toward methyltetrahydrofolate, adenosylmethionine, and flavodoxin.甲硫氨酸合酶以两种不同的构象存在,这两种构象对甲基四氢叶酸、腺苷甲硫氨酸和黄素氧还蛋白的反应性不同。
Biochemistry. 1998 Apr 21;37(16):5372-82. doi: 10.1021/bi9730893.
5
The thiostrepton A tryptophan methyltransferase TsrM catalyses a cob(II)alamin-dependent methyl transfer reaction.硫链丝菌素A色氨酸甲基转移酶TsrM催化一种依赖钴胺素(II)的甲基转移反应。
Nat Commun. 2015 Oct 12;6:8377. doi: 10.1038/ncomms9377.
6
Structural basis for non-radical catalysis by TsrM, a radical SAM methylase.TsrM,一种依赖于自由基 S-腺苷甲硫氨酸甲基酶的非自由基催化的结构基础。
Nat Chem Biol. 2021 Apr;17(4):485-491. doi: 10.1038/s41589-020-00717-y. Epub 2021 Jan 18.
7
The mechanism of adenosylmethionine-dependent activation of methionine synthase: a rapid kinetic analysis of intermediates in reductive methylation of Cob(II)alamin enzyme.腺苷甲硫氨酸依赖性甲硫氨酸合酶激活的机制:钴胺素(II)酶还原甲基化中间体的快速动力学分析。
Biochemistry. 1998 Sep 8;37(36):12649-58. doi: 10.1021/bi9808565.
8
Cobalamin-dependent methionine synthase is a modular protein with distinct regions for binding homocysteine, methyltetrahydrofolate, cobalamin, and adenosylmethionine.钴胺素依赖性甲硫氨酸合酶是一种模块化蛋白质,具有用于结合同型半胱氨酸、甲基四氢叶酸、钴胺素和腺苷甲硫氨酸的不同区域。
Biochemistry. 1997 Jul 1;36(26):8082-91. doi: 10.1021/bi9705164.
9
TsrM as a Model for Purifying and Characterizing Cobalamin-Dependent Radical S-Adenosylmethionine Methylases.TsrM作为纯化和表征钴胺素依赖性自由基S-腺苷甲硫氨酸甲基转移酶的模型。
Methods Enzymol. 2017;595:303-329. doi: 10.1016/bs.mie.2017.07.007. Epub 2017 Aug 21.
10
Stereochemical and Mechanistic Investigation of the Reaction Catalyzed by Fom3 from Streptomyces fradiae, a Cobalamin-Dependent Radical S-Adenosylmethionine Methylase.来自弗氏链霉菌的钴胺素依赖性自由基S-腺苷甲硫氨酸甲基转移酶Fom3催化反应的立体化学和机理研究。
Biochemistry. 2018 Aug 21;57(33):4972-4984. doi: 10.1021/acs.biochem.8b00693. Epub 2018 Aug 9.

引用本文的文献

1
Changing Fates of the Substrate Radicals Generated in the Active Sites of the B-Dependent Radical SAM Enzymes OxsB and AlsB.B 依赖性自由基 SAM 酶 OxsB 和 AlsB 活性部位生成的底物自由基的命运变化。
J Am Chem Soc. 2023 Feb 15;145(6):3656-3664. doi: 10.1021/jacs.2c12953. Epub 2023 Jan 31.
2
Structure and Catalytic Mechanism of Radical SAM Methylases.自由基S-腺苷甲硫氨酸甲基转移酶的结构与催化机制
Life (Basel). 2022 Oct 28;12(11):1732. doi: 10.3390/life12111732.
3
The Atypical Cobalamin-Dependent -Adenosyl-l-Methionine Nonradical Methylase TsrM and Its Radical Counterparts.

本文引用的文献

1
Parsing redox potentials of five ferredoxins found within Thermotoga maritima.解析海洋栖热菌中 5 种铁氧还蛋白的氧化还原电势。
Protein Sci. 2019 Jan;28(1):257-266. doi: 10.1002/pro.3547.
2
Ferredoxins as interchangeable redox components in support of MiaB, a radical S-adenosylmethionine methylthiotransferase.作为支持 MiaB(一种活性 S-腺苷甲硫氨酸甲基转移酶)的可互换氧化还原成分的铁氧还蛋白。
Protein Sci. 2019 Jan;28(1):267-282. doi: 10.1002/pro.3548.
3
Enhanced Solubilization of Class B Radical S-Adenosylmethionine Methylases by Improved Cobalamin Uptake in Escherichia coli.
非典型钴胺素依赖的 -腺苷-l-甲硫氨酸非自由基甲基转移酶 TsrM 及其自由基对应物。
J Am Chem Soc. 2022 Apr 6;144(13):5673-5684. doi: 10.1021/jacs.1c12064. Epub 2022 Mar 28.
4
Cellular assays identify barriers impeding iron-sulfur enzyme activity in a non-native prokaryotic host.细胞分析鉴定了在非天然原核宿主中阻碍铁硫酶活性的障碍。
Elife. 2022 Mar 4;11:e70936. doi: 10.7554/eLife.70936.
5
Structural Insight into the Substrate Scope of Viperin and Viperin-like Enzymes from Three Domains of Life.从生命的三个领域深入了解 viperin 和 viperin 样酶的底物范围的结构见解。
Biochemistry. 2021 Jul 6;60(26):2116-2129. doi: 10.1021/acs.biochem.0c00958. Epub 2021 Jun 22.
6
Structural basis for non-radical catalysis by TsrM, a radical SAM methylase.TsrM,一种依赖于自由基 S-腺苷甲硫氨酸甲基酶的非自由基催化的结构基础。
Nat Chem Biol. 2021 Apr;17(4):485-491. doi: 10.1038/s41589-020-00717-y. Epub 2021 Jan 18.
通过改善大肠杆菌中钴胺素的摄取来增强B类自由基S-腺苷甲硫氨酸甲基转移酶的溶解性
Biochemistry. 2018 Mar 6;57(9):1475-1490. doi: 10.1021/acs.biochem.7b01205. Epub 2018 Feb 19.
4
TsrM as a Model for Purifying and Characterizing Cobalamin-Dependent Radical S-Adenosylmethionine Methylases.TsrM作为纯化和表征钴胺素依赖性自由基S-腺苷甲硫氨酸甲基转移酶的模型。
Methods Enzymol. 2017;595:303-329. doi: 10.1016/bs.mie.2017.07.007. Epub 2017 Aug 21.
5
Efficient methylation of C2 in l-tryptophan by the cobalamin-dependent radical -adenosylmethionine methylase TsrM requires an unmodified N1 amine.钴胺素依赖性自由基-腺苷甲硫氨酸甲基转移酶TsrM对L-色氨酸中C2的高效甲基化需要未修饰的N1胺。
J Biol Chem. 2017 Sep 15;292(37):15456-15467. doi: 10.1074/jbc.M117.778548. Epub 2017 Jul 26.
6
Spectroscopic and Electrochemical Characterization of the Iron-Sulfur and Cobalamin Cofactors of TsrM, an Unusual Radical S-Adenosylmethionine Methylase.TsrM的铁硫和钴胺素辅因子的光谱和电化学表征,TsrM是一种不寻常的自由基S-腺苷甲硫氨酸甲基转移酶。
J Am Chem Soc. 2016 Mar 16;138(10):3416-26. doi: 10.1021/jacs.5b12592. Epub 2016 Mar 3.
7
Thiostrepton tryptophan methyltransferase expands the chemistry of radical SAM enzymes.硫链丝菌素色氨酸甲基转移酶扩展了自由基 SAM 酶的化学性质。
Nat Chem Biol. 2012 Dec;8(12):957-9. doi: 10.1038/nchembio.1091. Epub 2012 Oct 14.
8
Cobalamin reduction by dithionite. Evidence for the formation of a six-coordinate cobalamin(II) complex.连二亚硫酸钠还原钴胺素。形成六配位钴胺素(II)配合物的证据。
Dalton Trans. 2011 Oct 14;40(38):9831-4. doi: 10.1039/c1dt10219b. Epub 2011 Aug 30.
9
Recent advances in thiopeptide antibiotic biosynthesis.硫肽类抗生素生物合成的最新进展。
Nat Prod Rep. 2010 Feb;27(2):153-64. doi: 10.1039/b922434c. Epub 2009 Dec 7.
10
Fluorescence-based detection of thiols in vitro and in vivo using dithiol probes.使用二硫醇探针在体外和体内基于荧光检测硫醇。
Anal Biochem. 2006 May 15;352(2):265-73. doi: 10.1016/j.ab.2006.01.047. Epub 2006 Feb 20.