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人类长非编码 RNA 的扩展景观。

An expanded landscape of human long noncoding RNA.

机构信息

Biomedical Pioneering Innovation Center (BIOPIC), Beijing Advanced Innovation Center for Genomics (ICG), Center for Bioinformatics (CBI), and State Key Laboratory of Protein and Plant Gene Research at School of Life Sciences, Peking University, Beijing 100871, China.

出版信息

Nucleic Acids Res. 2019 Sep 5;47(15):7842-7856. doi: 10.1093/nar/gkz621.

Abstract

Long noncoding RNAs (lncRNAs) are emerging as key regulators of multiple essential biological processes involved in physiology and pathology. By analyzing the largest compendium of 14,166 samples from normal and tumor tissues, we significantly expand the landscape of human long noncoding RNA with a high-quality atlas: RefLnc (Reference catalog of LncRNA). Powered by comprehensive annotation across multiple sources, RefLnc helps to pinpoint 275 novel intergenic lncRNAs correlated with sex, age or race as well as 369 novel ones associated with patient survival, clinical stage, tumor metastasis or recurrence. Integrated in a user-friendly online portal, the expanded catalog of human lncRNAs provides a valuable resource for investigating lncRNA function in both human biology and cancer development.

摘要

长链非编码 RNA(lncRNA)正在成为参与生理和病理的多个重要生物学过程的关键调节因子。通过分析来自正常和肿瘤组织的 14166 个样本的最大汇编,我们使用高质量图谱:RefLnc(lncRNA 参考目录)极大地扩展了人类长链非编码 RNA 的景观。借助跨多个来源的全面注释,RefLnc 有助于确定 275 个与性别、年龄或种族相关的新型基因间 lncRNA 以及 369 个与患者生存、临床分期、肿瘤转移或复发相关的新型 lncRNA。整合到用户友好的在线门户中,扩展的人类 lncRNA 目录为研究 lncRNA 在人类生物学和癌症发展中的功能提供了宝贵的资源。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3000/6735957/7199240562fd/gkz621fig1.jpg

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