Key Laboratory of Marine Genetic Resources, Third Institute of Oceanography, Ministry of Natural Resources, Xiamen, 361005, PR China.
School of Life Science and Technology, Harbin Institute of Technology, Harbin 150080, PR China.
Int J Syst Evol Microbiol. 2019 Oct;69(10):3022-3030. doi: 10.1099/ijsem.0.003559.
Two novel strains, designated YLB-02 and YLB-04, were isolated from the deep-sea sediments of Yap Trench located in the Pacific Ocean. Cells of the strains were Gram-stain-positive, oxidase- and catalase-positive and rod-shaped. Phylogenetic analyses based on 16S rRNA gene sequences indicated that strain YLB-02 belonged to the genus and strain YLB-04 belonged to the genus . Strain YLB-02 showed similarities of 96.9 % with CCUG 53201, 96.3 % with CL-MP28, 96.1 % with J8B and 95.7 % with Ma-21. Strain YLB-04 showed the highest sequence similarity of 97.4 % with SYP-B691. The average nucleotide identity (ANI) and the DNA-DNA hybridisation (DDH) estimate values for strain YLB-02 and YLB-04 with their related type strains were below the respective threshold for species differentiation. The G+C contents of strains YLB-02 and YLB-04 were 37.3 and 45.4 mol%. The predominant (>10 %) cellular fatty acids of strain YLB-02 were iso-C, iso-C, iso-C and Cω7 alcohol, and those of strain YLB-04 were C, iso-C, anteiso-C and C. Their predominant ubiquinone was MK-7. The cell-wall peptidoglycan of strain YLB-02 contained glutamic acid, alanine, aspartic acid, lysine and ornithine, but no -diaminopimelic acid, while strain YLB-04 contained -diaminopimelic acid, glutamic acid, alanine, aspartic acid, lysine and ornithine. In addition to diphosphatidylglycerol (DPG) and phosphatidylglycerol (PG), the polar lipids of strain YLB-02 also consisted of an unidentified glycolipid (GL), two unidentified polar lipids (L1 and L2) and two unidentified phospholipids (PL1 and PL2), and those of strain YLB-04 also consisted of phosphatidylethanolamine (PE) and an unidentified phospholipid (PL). Based on phenotypic, genotypic and chemotaxonomic characteristics, two novel species are proposed, sp. nov. with YLB-02 (=MCCC 1A12699=JCM 32870) and sp. nov. with YLB-04 (=MCCC 1A12711=JCM 32872) as the type strains.
两株新菌株,分别命名为 YLB-02 和 YLB-04,从太平洋 Yap 海沟的深海沉积物中分离得到。两株菌的细胞革兰氏阳性,氧化酶和过氧化氢酶阳性,呈杆状。基于 16S rRNA 基因序列的系统发育分析表明,菌株 YLB-02 属于 属,而菌株 YLB-04 属于 属。菌株 YLB-02 与 CCUG 53201 的相似性为 96.9%,与 CL-MP28 的相似性为 96.3%,与 J8B 的相似性为 96.1%,与 Ma-21 的相似性为 95.7%。菌株 YLB-04 与 SYP-B691 的相似度最高,为 97.4%。菌株 YLB-02 和 YLB-04 与其相关的模式菌株的平均核苷酸同一性(ANI)和 DNA-DNA 杂交(DDH)估计值均低于种间分化的相应阈值。菌株 YLB-02 和 YLB-04 的 G+C 含量分别为 37.3mol%和 45.4mol%。菌株 YLB-02 的主要(>10%)细胞脂肪酸为 iso-C、iso-C、iso-C 和 Cω7 醇,而菌株 YLB-04 的主要脂肪酸为 C、iso-C、anteiso-C 和 C。它们的主要醌为 MK-7。菌株 YLB-02 的细胞壁肽聚糖含有谷氨酸、丙氨酸、天冬氨酸、赖氨酸和鸟氨酸,但不含 -二氨基庚二酸,而菌株 YLB-04 含有 -二氨基庚二酸、谷氨酸、丙氨酸、天冬氨酸、赖氨酸和鸟氨酸。除二磷脂酰甘油(DPG)和磷脂酰甘油(PG)外,菌株 YLB-02 的极性脂类还包括一种未知的糖脂(GL)、两种未知的极性脂类(L1 和 L2)和两种未知的磷脂(PL1 和 PL2),而菌株 YLB-04 的极性脂类还包括磷脂酰乙醇胺(PE)和一种未知的磷脂(PL)。基于表型、基因型和化学分类特征,提出了两个新物种,即 YLB-02(=MCCC 1A12699=JCM 32870)和 YLB-04(=MCCC 1A12711=JCM 32872),分别作为模式菌株。