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系统分析马铃薯 MYB 家族基因及其在发育和应激响应中的多种作用。

Systematic Analysis of MYB Family Genes in Potato and Their Multiple Roles in Development and Stress Responses.

机构信息

Key Laboratory for Tobacco Gene Resources, Tobacco Research Institute, Chinese Academy of Agricultural Sciences, Qingdao 266101, China.

Technology Center, China Tobacco Hunan Industrial Co., Ltd., Changsha 410007, China.

出版信息

Biomolecules. 2019 Jul 30;9(8):317. doi: 10.3390/biom9080317.

DOI:10.3390/biom9080317
PMID:31366107
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC6723670/
Abstract

The MYB proteins represent a large family of transcription factors and play important roles in development, senescence, and stress responses in plants. In the current study, 233 MYB transcription factor-encoding genes were identified and analyzed in the potato genome, including 119 R1-MYB, 112 R2R3-MYB, and two R1R2R3-MYB members. R2R3-MYB is the most abundant MYB subclass and potato R2R3-MYB members together with their homologs were divided into 35 well-supported subgroups as the result of phylogenetic analyses. Analyses on gene structure and protein motif revealed that members from the same subgroup shared similar exon/intron and motif organization, further supporting the results of phylogenetic analyses. Evolution of the potato MYB family was studied via syntenic analysis. Forty-one pairs of genes were predicted to have arisen from tandem or segmental duplication events, which played important roles in the expansion of the family. Expression profiling revealed that the genes were expressed in various tissues and several genes were identified to be induced by different stress conditions. Notably, was found to act as the homolog of and was significantly up-regulated by salt and drought stress treatments. Furthermore, overexpression of in enhanced salt stress tolerance of transgenic plants. The results from this study provided information for further functional analysis and for crop improvements through genetic manipulation of these genes.

摘要

MYB 蛋白家族是一类重要的转录因子,在植物的发育、衰老和应激响应中发挥着重要作用。在本研究中,我们在马铃薯基因组中鉴定和分析了 233 个 MYB 转录因子编码基因,包括 119 个 R1-MYB、112 个 R2R3-MYB 和两个 R1R2R3-MYB 成员。R2R3-MYB 是最丰富的 MYB 亚家族,马铃薯 R2R3-MYB 成员及其同源物通过系统发育分析被分为 35 个支持度较高的亚组。基因结构和蛋白基序分析表明,同一亚组的成员具有相似的外显子/内含子和基序组织,进一步支持了系统发育分析的结果。通过共线性分析研究了马铃薯 MYB 家族的进化。预测有 41 对基因是通过串联或片段重复事件产生的,这对家族的扩张起到了重要作用。表达谱分析表明,这些基因在各种组织中表达,并且有几个基因被鉴定为对不同的胁迫条件有诱导作用。值得注意的是,发现是 的同源物,并且在盐和干旱胁迫处理下显著上调。此外,在 中过表达 增强了转基因植物对盐胁迫的耐受性。本研究的结果为进一步的功能分析提供了信息,并为通过遗传操作这些 基因进行作物改良提供了信息。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a0bf/6723670/51edb833f30e/biomolecules-09-00317-g011.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a0bf/6723670/e799c21d521a/biomolecules-09-00317-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a0bf/6723670/38e6ab72855f/biomolecules-09-00317-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a0bf/6723670/0b0a87cddde1/biomolecules-09-00317-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a0bf/6723670/4362fac96e91/biomolecules-09-00317-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a0bf/6723670/f347528cb093/biomolecules-09-00317-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a0bf/6723670/d3739ab1d3af/biomolecules-09-00317-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a0bf/6723670/ac304f7b8ff7/biomolecules-09-00317-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a0bf/6723670/ce01eac3a794/biomolecules-09-00317-g008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a0bf/6723670/e5ca354ade50/biomolecules-09-00317-g009.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a0bf/6723670/14751b6c73df/biomolecules-09-00317-g010.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a0bf/6723670/51edb833f30e/biomolecules-09-00317-g011.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a0bf/6723670/e799c21d521a/biomolecules-09-00317-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a0bf/6723670/38e6ab72855f/biomolecules-09-00317-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a0bf/6723670/0b0a87cddde1/biomolecules-09-00317-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a0bf/6723670/4362fac96e91/biomolecules-09-00317-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a0bf/6723670/f347528cb093/biomolecules-09-00317-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a0bf/6723670/d3739ab1d3af/biomolecules-09-00317-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a0bf/6723670/ac304f7b8ff7/biomolecules-09-00317-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a0bf/6723670/ce01eac3a794/biomolecules-09-00317-g008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a0bf/6723670/e5ca354ade50/biomolecules-09-00317-g009.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a0bf/6723670/14751b6c73df/biomolecules-09-00317-g010.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a0bf/6723670/51edb833f30e/biomolecules-09-00317-g011.jpg

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