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长链非编码 RNA HOTAIR 介导的 Wnt/β-catenin 网络建模预测和验证软骨损伤的治疗靶点。

LncRNA HOTAIR-mediated Wnt/β-catenin network modeling to predict and validate therapeutic targets for cartilage damage.

机构信息

Institute of Arthritis Research, Shanghai Academy of Chinese Medical Sciences, Guanghua Integrative Medicine Hospital / Shanghai University of T.C.M, Shanghai, 200052, China.

Institute of Basic Research in Clinical Medicine, China Academy of Chinese Medical Sciences, Beijing, 100700, China.

出版信息

BMC Bioinformatics. 2019 Jul 31;20(1):412. doi: 10.1186/s12859-019-2981-4.

Abstract

BACKGROUND

Cartilage damage is a crucial feature involved in several pathological conditions characterized by joint disorders, such as osteoarthritis and rheumatoid arthritis. Accumulated evidences showed that Wnt/β-catenin pathway plays a role in the pathogenesis of cartilage damage. In addition, it is experimentally documented that lncRNA (long non-coding RNA) HOTAIR plays a key role in the regulation of Wnt/β-catenin pathway based on directly decreased WIF-1 expression. Further, it is reported that Wnt/β-catenin pathway is a potent pathway to regulate the expression of MMP-13, which is responsible for degradation of collagen type II in articular cartilage. It is increasingly recognized that systems modeling approach provides an opportunity to understand the complex relationships and direct quantitative analysis of dynamic network in various diseases.

RESULTS

A dynamic network of lncRNA HOTAIR-mediated Wnt/β-catenin pathway regulating MMP-13 is developed to investigate the dynamic mechanism of the network involved in the pathogenesis of cartilage damage. Based on the network modeling, the potential therapeutic intervention point Axin is predicted and confirmed by the experimental validation.

CONCLUSIONS

Our study provides a promising strategy for revealing potential dynamic mechanism and assessing potential targets which contribute to the prevention of the pathological conditions related to cartilage damage.

摘要

背景

软骨损伤是几种以关节紊乱为特征的病理状况的关键特征,如骨关节炎和类风湿关节炎。大量证据表明 Wnt/β-catenin 通路在软骨损伤的发病机制中起作用。此外,实验证明长链非编码 RNA(lncRNA)HOTAIR 通过直接降低 WIF-1 的表达在调节 Wnt/β-catenin 通路中起关键作用。此外,据报道,Wnt/β-catenin 通路是调节 MMP-13 表达的有效途径,MMP-13 负责降解关节软骨中的 II 型胶原。人们越来越认识到,系统建模方法为理解各种疾病中复杂的关系和直接对动态网络进行定量分析提供了机会。

结果

构建了一个 lncRNA HOTAIR 介导的 Wnt/β-catenin 通路调节 MMP-13 的动态网络,以研究该网络在软骨损伤发病机制中的动态机制。基于网络建模,通过实验验证预测并证实了潜在的治疗干预点 Axin。

结论

我们的研究为揭示潜在的动态机制和评估潜在的靶点提供了一个有前途的策略,这些靶点有助于预防与软骨损伤相关的病理状况。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a3be/6670131/4aa2d1360b7f/12859_2019_2981_Fig1_HTML.jpg

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