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非核糖体肽合成酶催化的 N-酰基-α-氨基酸-β-内酰胺的形成的结构基础。

The structural basis of N-acyl-α-amino-β-lactone formation catalyzed by a nonribosomal peptide synthetase.

机构信息

Department of Structural Biology, Jacobs School of Medicine & Biomedical Sciences at the University at Buffalo, 955 Main Street, Buffalo, NY, 14203, USA.

Department of Chemistry, Washington University in St. Louis, One Brookings Drive, St. Louis, MO, 63130, USA.

出版信息

Nat Commun. 2019 Jul 31;10(1):3432. doi: 10.1038/s41467-019-11383-7.

Abstract

Nonribosomal peptide synthetases produce diverse natural products using a multidomain architecture where the growing peptide, attached to an integrated carrier domain, is delivered to neighboring catalytic domains for bond formation and modification. Investigation of these systems can lead to the discovery of new structures, unusual biosynthetic transformations, and to the engineering of catalysts for generating new products. The antimicrobial β-lactone obafluorin is produced nonribosomally from dihydroxybenzoic acid and a β-hydroxy amino acid that cyclizes into the β-lactone during product release. Here we report the structure of the nonribosomal peptide synthetase ObiF1, highlighting the structure of the β-lactone-producing thioesterase domain and an interaction between the C-terminal MbtH-like domain with an upstream adenylation domain. Biochemical assays examine catalytic promiscuity, provide mechanistic insight, and demonstrate utility for generating obafluorin analogs. These results advance our understanding of the structural cycle of nonribosomal peptide synthetases and provide insights into the production of β-lactone natural products.

摘要

非核糖体肽合成酶利用多结构域架构产生多样化的天然产物,其中不断增长的肽与整合的载体结构域相连,并被递送至相邻的催化结构域以进行键合形成和修饰。对这些系统的研究可以发现新的结构、不寻常的生物合成转化,并对生成新产品的催化剂进行工程设计。抗菌β-内酰胺类抗生素 obafluorin 由二羟基苯甲酸和β-羟氨基酸非核糖体合成而来,在产物释放过程中该β-羟氨基酸会环化成β-内酰胺。在此,我们报告了非核糖体肽合成酶 ObiF1 的结构,重点介绍了β-内酰胺生成硫酯酶结构域的结构以及 C 端 MbtH 样结构域与上游氨酰化结构域之间的相互作用。生化分析检验了催化的多功能性,提供了机制见解,并展示了生成 obafluorin 类似物的应用。这些结果增进了我们对非核糖体肽合成酶结构循环的理解,并深入了解了β-内酰胺天然产物的生成机制。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ee24/6668435/e8b6bfd390da/41467_2019_11383_Fig1_HTML.jpg

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