Key Laboratory of Applied Marine Biotechnology, Ministry of Education, Ningbo University, Ningbo 315211, China.
Institute of Aquaculture, Faculty of Natural Sciences, University of Stirling, Stirling FK9 4LA, Scotland, UK.
Mar Drugs. 2019 Aug 10;17(8):466. doi: 10.3390/md17080466.
The marine gastropod is served as a luxury food in Asian countries and used in traditional Chinese medicine to treat lumbago and deafness. The lack of genomic data on is a barrier to aquaculture development and functional characteristics of potential bioactive molecules are poorly understood. In the present study, we used high-throughput sequencing technologies to generate the first transcriptomic database of . A total of 41 unique conopeptides were retrieved from 44 unigenes, containing 6-cysteine frameworks belonging to four superfamilies. Duplication of mature regions and alternative splicing were also found in some of the conopeptides, and the de novo assembly identified a total of 76,306 transcripts with an average length of 824.6 nt, of which including 75,620 (99.1%) were annotated. In addition, simple sequence repeats (SSRs) detection identified 14,000 unigenes containing 20,735 SSRs, among which, 23 polymorphic SSRs were screened. Thirteen of these markers could be amplified in and seven in . This study provides reports of conopeptide genes in Buccinidae for the first time as well as genomic resources for further drug development, gene discovery and population resource studies of this species.
海洋腹足纲动物在亚洲国家被视为一种奢侈食品,并在传统中医中用于治疗腰痛和耳聋。由于缺乏有关的基因组数据,水产养殖的发展受到了阻碍,而且潜在生物活性分子的功能特征也知之甚少。在本研究中,我们使用高通量测序技术生成了的第一个转录组数据库。从 44 个基因中总共检索到 41 种独特的 conopeptides,其中包含属于四个超家族的 6 个半胱氨酸框架。在一些 conopeptides 中也发现了成熟区域的复制和选择性剪接,从头组装总共鉴定出了 76,306 个转录本,平均长度为 824.6 nt,其中包括 75,620 个(99.1%)被注释。此外,简单重复序列(SSR)检测鉴定出 14,000 个含有 20,735 个 SSR 的基因,其中筛选出 23 个多态性 SSR。这 13 个标记可以在中扩增,7 个可以在中扩增。本研究首次报道了宝螺科的 conopeptide 基因,为进一步的药物开发、基因发现和该物种的种群资源研究提供了基因组资源。