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暗影红:一种新型色蛋白,具有降低的非特异性结合和提高的在活细胞中的表达。

ShadowR: a novel chromoprotein with reduced non-specific binding and improved expression in living cells.

机构信息

Supportive Center for Brain Research, National Institute for Physiological Sciences, Okazaki, Aichi, 444-8585, Japan.

Department of Physiological Sciences, The Graduate University for Advanced Studies, Hayama, Kanagawa, 240-0193, Japan.

出版信息

Sci Rep. 2019 Aug 19;9(1):12072. doi: 10.1038/s41598-019-48604-4.

DOI:10.1038/s41598-019-48604-4
PMID:31427680
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC6700193/
Abstract

Here we developed an orange light-absorbing chromoprotein named ShadowR as a novel acceptor for performing fluorescence lifetime imaging microscopy-based Förster resonance energy transfer (FLIM-FRET) measurement in living cells. ShadowR was generated by replacing hydrophobic amino acids located at the surface of the chromoprotein Ultramarine with hydrophilic amino acids in order to reduce non-specific interactions with cytosolic proteins. Similar to Ultramarine, ShadowR shows high absorption capacity and no fluorescence. However, it exhibits reduced non-specific binding to cytosolic proteins and is highly expressed in HeLa cells. Using tandem constructs and a LOVTRAP system, we showed that ShadowR can be used as a FRET acceptor in combination with donor mRuby2 or mScarlet in HeLa cells. Thus, ShadowR is a useful, novel FLIM-FRET acceptor.

摘要

在这里,我们开发了一种橙色吸光的色蛋白,名为 ShadowR,作为一种新型的受体,用于在活细胞中进行荧光寿命成像显微镜的Förster 共振能量转移(FLIM-FRET)测量。ShadowR 通过用亲水氨基酸取代位于色蛋白 Ultramarine 表面的疏水性氨基酸来产生,以减少与细胞质蛋白的非特异性相互作用。与 Ultramarine 类似,ShadowR 具有高的吸收能力和无荧光。然而,它表现出与细胞质蛋白的非特异性结合减少,并且在 HeLa 细胞中高度表达。使用串联构建体和 LOVTRAP 系统,我们表明 ShadowR 可以与供体 mRuby2 或 mScarlet 结合,作为 HeLa 细胞中 FRET 受体使用。因此,ShadowR 是一种有用的新型 FLIM-FRET 受体。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fdaa/6700193/301e8b4f34ca/41598_2019_48604_Fig7_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fdaa/6700193/a9058d5c6c89/41598_2019_48604_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fdaa/6700193/e8bacbff6aa6/41598_2019_48604_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fdaa/6700193/0da701ff598a/41598_2019_48604_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fdaa/6700193/41453f30e1c3/41598_2019_48604_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fdaa/6700193/d76c63f0d94b/41598_2019_48604_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fdaa/6700193/3fb6d22e0486/41598_2019_48604_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fdaa/6700193/301e8b4f34ca/41598_2019_48604_Fig7_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fdaa/6700193/a9058d5c6c89/41598_2019_48604_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fdaa/6700193/e8bacbff6aa6/41598_2019_48604_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fdaa/6700193/0da701ff598a/41598_2019_48604_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fdaa/6700193/41453f30e1c3/41598_2019_48604_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fdaa/6700193/d76c63f0d94b/41598_2019_48604_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fdaa/6700193/3fb6d22e0486/41598_2019_48604_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fdaa/6700193/301e8b4f34ca/41598_2019_48604_Fig7_HTML.jpg

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PLoS One. 2018 Jan 2;13(1):e0183585. doi: 10.1371/journal.pone.0183585. eCollection 2018.
3
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4
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