Department of Microbiology and Parasitology, Faculty of Pharmacy, University of Sevilla, 41012 Sevilla, Spain.
Int J Syst Evol Microbiol. 2019 Nov;69(11):3636-3643. doi: 10.1099/ijsem.0.003675.
An extremely halophilic archaeon, strain F13-25, was isolated from a marine saltern located in Isla Cristina, Huelva, on the south-west coast of Spain. The novel strain had pink-pigmented, non-motile, coccoid cells. Optimal growth was achieved at 25 % (w/v) NaCl, pH 7.5 and 37 °C. Strain F13-25 possessed two heterogeneous 16S rRNA genes ( and ) most closely related to D108 (97.6-99.2 % sequence similarity) and TNN28 (95.9-98.8 %). On the basis of the results of gene sequence analysis, strain F13-25 was also closely related to IBRC-M 10043 (89.9 %) and TNN28 (92.3 %). Relatedness values, computed using the Genome-to-Genome Distance Calculator, between strain F13-25 and IBRC-M 10043 and IBRC-M 10760 were 34.6 and 36.2 %, respectively. Average nucleotide identity values based on orthoANI, ANIb and ANIm of strain F13-25 and IBRC-M 10043 and IBRC-M 10760 were 88.0 and 88.8, 87.1 and 87.6 %, and 89.2 and 89.6 %, respectively. All values were far below the threshold accepted for prokaryotic species delineation. The major polar lipids were phosphatidylglycerol, phosphatidylglycerol phosphate methyl ester and one glycolipid chromatographically identical to sulfated diglycosyl diether. The DNA G+C content was 65.7 mol% (genome). The results of phylogenetic, phenotypic and chemotaxonomic analyses indicated that strain F13-25 represents a novel species of the genus , for which the name sp. nov., with type strain F13-25 (=CECT 9384=IBRC-M 11176), is proposed.
一株极端嗜盐古菌,菌株 F13-25,从西班牙西南部韦尔瓦的 Isla Cristina 的一个海洋盐场中分离出来。该新型菌株的细胞呈粉红色,非运动性,球形。最佳生长条件为 25%(w/v)NaCl、pH7.5 和 37°C。菌株 F13-25 具有两个异质的 16S rRNA 基因(和),与 D108(97.6-99.2%序列相似性)和 TNN28(95.9-98.8%)最为密切相关。基于 基因序列分析的结果,菌株 F13-25 也与 IBRC-M 10043(89.9%)和 TNN28(92.3%)密切相关。利用基因组到基因组距离计算器计算出的菌株 F13-25 与 IBRC-M 10043 和 IBRC-M 10760 之间的相关性值分别为 34.6%和 36.2%。基于 orthoANI、ANIb 和 ANIm 的菌株 F13-25 与 IBRC-M 10043 和 IBRC-M 10760 的平均核苷酸同一性值分别为 88.0%和 88.8%、87.1%和 87.6%、89.2%和 89.6%。所有这些值都远低于用于原核生物物种划分的阈值。主要极性脂为磷脂酰甘油、磷脂酰甘油磷酸甲酯和一种与硫酸化双糖基醚色谱相同的糖脂。DNA G+C 含量为 65.7mol%(基因组)。系统发育、表型和化学分类学分析的结果表明,菌株 F13-25 代表了一个属的新型物种,建议将其命名为 sp. nov.,其模式菌株为 F13-25(=CECT 9384=IBRC-M 11176)。