Department of Ophthalmology, Zhujiang Hospital, Southern Medical University, Guangzhou, Guangdong, P. R. China.
School of Nursing, Hunan University of Medicine, Huaihua, Hunan, P. R. China.
J Microbiol. 2019 Nov;57(11):1025-1032. doi: 10.1007/s12275-019-9127-2. Epub 2019 Aug 28.
rRNA gene high-throughput sequencing was performed in the conjunctival swab samples to investigate the composition of the OS bacterial community in DE (n=35) and NDE (n=54) and compared the composition of MGD (n=25) and NMGD (n=10) among DE subjects. Deep sequencing of OS 16S rDNA from DE (n=35) and NDE (n=54) demonstrated great a difference in alpha and beta diversity between the OS bacterial flora (P < 0.05). The similar OS microbial structures were shown at the phylum and genus levels by bioinformatics analysis between them, and in LEfSe (linear discriminant analysis effect size) analysis, Bacteroidia and Bacteroidetes were enriched in DE, while Pseudomonas was plentiful in NDE (linear discriminant analysis [LDA] > 4.0). Among the DE group, there was no significant difference in α and β diversity between MGD and NMGD (P > 0.05). Surprisingly, Bacilli was the dominant microbe in MGD, and Bacteroidetes was the superior bacteria in NMGD among DE subjects (LDA > 4.0). Different diversity of OS bacteria composition between DE and NDE and the altered diversity of OS bacteria may play an important role in DE. Moreover, the lower dominance of OS bacteria in DE may be associated with the occurrence and development of DE. Although there was no significant difference in alpha and beta analysis, the OS dominant microbe between MGD and NMGD among DE was different.
对结膜拭子样本进行 rRNA 基因高通量测序,以研究 DE(n=35)和 NDE(n=54)中 OS 细菌群落的组成,并比较 DE 受试者中的 MGD(n=25)和 NMGD(n=10)的组成。对 DE(n=35)和 NDE(n=54)的 OS 16S rDNA 进行深度测序,结果表明 OS 细菌菌群之间的α和β多样性存在显著差异(P<0.05)。通过生物信息学分析,它们在门和属水平上显示出相似的 OS 微生物结构,在 LEfSe(线性判别分析效应大小)分析中,Bacteroidia 和 Bacteroidetes 在 DE 中富集,而 Pseudomonas 在 NDE 中丰富(线性判别分析[LDA]>4.0)。在 DE 组中,MGD 和 NMGD 之间的α和β多样性无显著差异(P>0.05)。令人惊讶的是,MGD 中优势微生物为 Bacilli,DE 中 NMGD 的优势细菌为 Bacteroidetes(LDA>4.0)。DE 和 NDE 之间 OS 细菌组成的多样性差异以及 OS 细菌多样性的改变可能在 DE 中发挥重要作用。此外,DE 中 OS 细菌的优势度较低可能与 DE 的发生和发展有关。尽管在 alpha 和 beta 分析中没有显著差异,但 DE 中 MGD 和 NMGD 之间的 OS 优势微生物不同。