• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

深紫外飞秒受激拉曼光谱揭示细菌视紫红质中视黄醛发色团光异构化之前的蛋白质动力学

Protein Dynamics Preceding Photoisomerization of the Retinal Chromophore in Bacteriorhodopsin Revealed by Deep-UV Femtosecond Stimulated Raman Spectroscopy.

作者信息

Tahara Shinya, Kuramochi Hikaru, Takeuchi Satoshi, Tahara Tahei

机构信息

Molecular Spectroscopy Laboratory , RIKEN , 2-1 Hirosawa , Wako 351-0198 , Japan.

Ultrafast Spectroscopy Research Team , RIKEN Center for Advanced Photonics (RAP) , 2-1 Hirosawa , Wako 351-0198 , Japan.

出版信息

J Phys Chem Lett. 2019 Sep 19;10(18):5422-5427. doi: 10.1021/acs.jpclett.9b02283. Epub 2019 Aug 30.

DOI:10.1021/acs.jpclett.9b02283
PMID:31469573
Abstract

Bacteriorhodopsin is a prototypical photoreceptor protein that functions as a light-driven proton pump. The retinal chromophore of bacteriorhodopsin undergoes C═C trans-to-cis isomerization upon photoexcitation, and it has been believed to be the first event that triggers the cascaded structural changes in bacteriorhodopsin. We investigated the protein dynamics of bacteriorhodopsin using deep-ultraviolet resonance femtosecond stimulated Raman spectroscopy. It was found that the stimulated Raman signals of tryptophan and tyrosine residues exhibit significant changes within 0.2 ps after photoexcitation while they do not noticeably change during the isomerization process. This result implies that the protein environment changes first, and its change is small during isomerization. The obtained femtosecond stimulated Raman data indicate that ultrafast change is induced in the protein part by the sudden creation of the large dipole of the excited-state chromophore, providing an environment that realizes efficient and selective isomerization.

摘要

细菌视紫红质是一种典型的光感受器蛋白,其功能是作为光驱动质子泵。细菌视紫红质的视黄醛发色团在光激发时会发生C═C反式到顺式的异构化,并且一直被认为是触发细菌视紫红质级联结构变化的首个事件。我们使用深紫外共振飞秒受激拉曼光谱研究了细菌视紫红质的蛋白质动力学。结果发现,色氨酸和酪氨酸残基的受激拉曼信号在光激发后0.2皮秒内呈现出显著变化,而在异构化过程中它们没有明显变化。这一结果表明蛋白质环境首先发生变化,并且在异构化过程中其变化很小。所获得的飞秒受激拉曼数据表明,激发态发色团的大偶极子的突然产生在蛋白质部分诱导了超快变化,从而提供了一个实现高效且选择性异构化的环境。

相似文献

1
Protein Dynamics Preceding Photoisomerization of the Retinal Chromophore in Bacteriorhodopsin Revealed by Deep-UV Femtosecond Stimulated Raman Spectroscopy.深紫外飞秒受激拉曼光谱揭示细菌视紫红质中视黄醛发色团光异构化之前的蛋白质动力学
J Phys Chem Lett. 2019 Sep 19;10(18):5422-5427. doi: 10.1021/acs.jpclett.9b02283. Epub 2019 Aug 30.
2
Picosecond time-resolved ultraviolet resonance Raman spectroscopy of bacteriorhodopsin: primary protein response to the photoisomerization of retinal.细菌视紫红质的皮秒时间分辨紫外共振拉曼光谱:蛋白质对视黄醛光异构化的初始响应。
J Phys Chem B. 2009 Sep 3;113(35):12121-8. doi: 10.1021/jp904388w.
3
Femtosecond time-resolved stimulated Raman reveals the birth of bacteriorhodopsin's J and K intermediates.飞秒时间分辨受激拉曼光谱揭示了细菌视紫红质J和K中间体的产生过程。
J Am Chem Soc. 2009 Jun 10;131(22):7592-7. doi: 10.1021/ja809137x.
4
Retinal isomerization in bacteriorhodopsin captured by a femtosecond x-ray laser.利用飞秒 X 射线激光捕获的菌紫质中的视网膜异构化。
Science. 2018 Jul 13;361(6398). doi: 10.1126/science.aat0094. Epub 2018 Jun 14.
5
Ultraviolet resonance Raman spectroscopy of bacteriorhodopsin.细菌视紫红质的紫外共振拉曼光谱
Photochem Photobiol. 1990 Sep;52(3):605-7. doi: 10.1111/j.1751-1097.1990.tb01806.x.
6
Structural changes of pharaonis phoborhodopsin upon photoisomerization of the retinal chromophore: infrared spectral comparison with bacteriorhodopsin.视网膜发色团光异构化后法老嗜盐菌视紫红质的结构变化:与细菌视紫红质的红外光谱比较
Biochemistry. 2001 Aug 7;40(31):9238-46. doi: 10.1021/bi0103819.
7
Three-dimensional view of ultrafast dynamics in photoexcited bacteriorhodopsin.三维视角下的光激发细菌视紫红质超快动力学。
Nat Commun. 2019 Jul 18;10(1):3177. doi: 10.1038/s41467-019-10758-0.
8
Determination of retinal chromophore structure in bacteriorhodopsin with resonance Raman spectroscopy.利用共振拉曼光谱法测定细菌视紫红质中视网膜发色团的结构。
J Membr Biol. 1985;85(2):95-109. doi: 10.1007/BF01871263.
9
Direct observation of the femtosecond excited-state cis-trans isomerization in bacteriorhodopsin.细菌视紫红质中飞秒激发态顺反异构化的直接观测。
Science. 1988 May 6;240(4853):777-9. doi: 10.1126/science.3363359.
10
The trans-cis isomerization reaction dynamics in sensory rhodopsin II by femtosecond time-resolved midinfrared spectroscopy: chromophore and protein dynamics.利用飞秒时间分辨中红外光谱研究感官视紫红质II中的反式-顺式异构化反应动力学:发色团和蛋白质动力学
Biopolymers. 2006 Jul;82(4):358-62. doi: 10.1002/bip.20475.

引用本文的文献

1
Ultrafast Protein Dynamics Prior to Retinal Photoisomerization in Microbial Rhodopsins.微生物视紫红质中视网膜光异构化之前的超快蛋白质动力学。
J Phys Chem Lett. 2025 Jun 12;16(23):5732-5738. doi: 10.1021/acs.jpclett.5c00623. Epub 2025 Jun 2.
2
Bacteriorhodopsin-Based pH Sensor for Cell Culture Condition Regulation.用于细胞培养条件调控的基于细菌视紫红质的pH传感器
Materials (Basel). 2025 Jan 21;18(3):478. doi: 10.3390/ma18030478.
3
Ultrafast Raman observation of the perpendicular intermediate phantom state of stilbene photoisomerization.
超快拉曼光谱对芪光异构化垂直中间幻态的观测
Nat Chem. 2024 Jan;16(1):22-27. doi: 10.1038/s41557-023-01397-6. Epub 2024 Jan 5.
4
Impact of protein-chromophore interaction on the retinal excited state and photocycle of rhodopsin: role of conserved tryptophan residues.蛋白质-发色团相互作用对视紫红质视网膜激发态和光循环的影响:保守色氨酸残基的作用。
Chem Sci. 2023 Sep 6;14(36):9951-9958. doi: 10.1039/d3sc02961a. eCollection 2023 Sep 20.
5
Effects of the Unique Chromophore-Protein Interactions on the Primary Photoreaction of Schizorhodopsin.独特生色团-蛋白相互作用对分裂视紫红质原初光反应的影响。
J Phys Chem Lett. 2023 Aug 10;14(31):7083-7091. doi: 10.1021/acs.jpclett.3c01133. Epub 2023 Aug 1.
6
Convergent evolution of animal and microbial rhodopsins.动物和微生物视紫红质的趋同进化。
RSC Adv. 2023 Feb 13;13(8):5367-5381. doi: 10.1039/d2ra07073a. eCollection 2023 Feb 6.
7
Ultrafast protein response in the Pfr state of Cph1 phytochrome.超快的 Cph1 光敏色素 Pfr 状态下的蛋白质响应。
Photochem Photobiol Sci. 2023 Apr;22(4):919-930. doi: 10.1007/s43630-023-00362-z. Epub 2023 Jan 18.
8
Ultrafast spectra and kinetics of human green-cone visual pigment at room temperature.室温下人绿色视锥视觉色素的超快光谱和动力学。
Proc Natl Acad Sci U S A. 2023 Jan 3;120(1):e2214276120. doi: 10.1073/pnas.2214276120. Epub 2022 Dec 28.
9
Photoinduced isomerization sampling of retinal in bacteriorhodopsin.细菌视紫红质中视黄醛的光致异构化采样
PNAS Nexus. 2022 Jul 1;1(3):pgac103. doi: 10.1093/pnasnexus/pgac103. eCollection 2022 Jul.
10
Rhodopsins: An Excitingly Versatile Protein Species for Research, Development and Creative Engineering.视紫红质:一种用于研究、开发和创新工程的极具通用性的蛋白质种类。
Front Chem. 2022 Jun 22;10:879609. doi: 10.3389/fchem.2022.879609. eCollection 2022.