Department of Chemical System Engineering, School of Engineering, The University of Tokyo 7-3-1, Tokyo 113-8656, Japan.
The National Institute of Advanced Industrial Science and Technology (AIST), Tsukuba 305-8560, Japan.
Molecules. 2019 Aug 30;24(17):3166. doi: 10.3390/molecules24173166.
Using the second-order Møller-Plesset perturbation theory (MP2), together with Dunning's all-electron correlation consistent basis set aug-cc-pVTZ, we show that the covalently bound oxygen atom present in a series of 21 prototypical monomer molecules examined does conceive a positive (or a negative) σ-hole. A σ-hole, in general, is an electron density-deficient region on a bound atom M along the outer extension of the R-M covalent bond, where R is the reminder part of the molecule, and M is the main group atom covalently bonded to R. We have also examined some exemplar 1:1 binary complexes that are formed between five randomly chosen monomers of the above series and the nitrogen- and oxygen-containing Lewis bases in N, PN, NH, and OH. We show that the O-centered positive σ-hole in the selected monomers has the ability to form the chalcogen bonding interaction, and this is when the σ-hole on O is placed in the close proximity of the negative site in the partner molecule. Although the interaction energy and the various other 12 characteristics revealed from this study indicate the presence of any weakly bound interaction between the monomers in the six complexes, our result is strongly inconsistent with the general view that oxygen does not form a chalcogen-bonded interaction.
利用二阶 Møller-Plesset 微扰理论(MP2),并结合 Dunning 的全电子相关一致基组 aug-cc-pVTZ,我们证明了在 21 个被研究的典型单体分子中,与碳原子共价键合的氧原子确实存在正(或负)σ-hole。一般来说,σ-hole 是指在 R-M 共价键的外伸部分上,与主族原子 M 共价键合的束缚原子 M 上的电子密度不足区域,其中 R 是分子的剩余部分。我们还研究了一些由上述系列中的五个随机选择的单体与含氮和含氧的路易斯碱(如 N、PN、NH 和 OH)形成的 1:1 二元复合物。我们发现,所选单体中 O 中心的正 σ-hole 具有形成硫属键相互作用的能力,这是当 O 上的 σ-hole 与配合物分子中的负位点接近时发生的。尽管这项研究揭示的相互作用能和其他 12 种特性表明在六个复合物中的单体之间存在任何弱结合相互作用,但我们的结果与普遍观点强烈不一致,即氧不会形成硫属键相互作用。