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波兰七个分离株的遗传多样性

Genetic Diversity of Seven Isolates in Poland.

作者信息

Cieślińska Mirosława

机构信息

Department of Plant Pathology, Research Institute of Horticulture, Konstytucji 3 Maja 1/3, 96-100 Skierniewice, Poland.

出版信息

Plant Pathol J. 2019 Aug;35(4):389-392. doi: 10.5423/PPJ.NT.12.2018.0306. Epub 2019 Aug 1.

DOI:10.5423/PPJ.NT.12.2018.0306
PMID:31481862
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC6706017/
Abstract

The studies on detection of the (SMoV) have been conducted in Poland for breeding programme purpose and for producers of strawberry plant material. Leaf samples collected from infected strawberry plants were grafted on sp. Indicators which were maintained in greenhouse for further study. Seven var. 'Alpine' indicators infected by SMoV were used for the study aimed on molecular characterization of virus isolates. Partial RNA2 was amplified from total nucleic acids using the RT-PCR method. The obtained amplicons separately digested with I, I, III, I, and I enzymes showed different restriction profiles. The nucleotide sequences analysis of RNA2 fragment confirmed the genetic diversity of the SMoV isolates as their similarity ranged from 94.7 to 100%. Polish isolates shared 75.7-99.2% identity with sequence of the virus strains from the Czech Republic, the Netherlands, and Canada. Phylogenetic analysis resulted in grouping of the isolates found in Poland together with one of the Czech strain whereas two other from the Czech and the strains from the Netherlands and Canada created the separate cluster.

摘要

在波兰,为了育种计划以及草莓种植材料生产商的目的,开展了对草莓潜隐环斑病毒(SMoV)的检测研究。从受感染的草莓植株上采集叶片样本,嫁接到指示植物上,这些指示植物在温室中保存以进行进一步研究。七个受SMoV感染的“高山”品种指示植物被用于旨在对病毒分离株进行分子特征分析的研究。使用RT-PCR方法从总核酸中扩增出部分RNA2。用I、I、III,、I和I酶分别消化获得的扩增子,显示出不同的限制性图谱。RNA2片段的核苷酸序列分析证实了SMoV分离株的遗传多样性,因为它们的相似性范围为94.7%至100%。波兰分离株与来自捷克共和国、荷兰和加拿大的病毒株序列具有75.7%-99.2%的同一性。系统发育分析结果是,波兰发现的分离株与捷克的一个菌株归为一组,而来自捷克的另外两个菌株以及来自荷兰和加拿大的菌株形成了单独的簇。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3240/6706017/e41b11f6e570/ppj-35-389f2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3240/6706017/7210f6c2c6ce/ppj-35-389f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3240/6706017/e41b11f6e570/ppj-35-389f2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3240/6706017/7210f6c2c6ce/ppj-35-389f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3240/6706017/e41b11f6e570/ppj-35-389f2.jpg

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本文引用的文献

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Plant Dis. 2003 Apr;87(4):385-390. doi: 10.1094/PDIS.2003.87.4.385.
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Complete genome sequences of two divergent isolates of strawberry crinkle virus coinfecting a single strawberry plant.共同感染一株草莓植株的两种不同草莓皱缩病毒分离株的全基因组序列。
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Genome sequence analysis of five Canadian isolates of strawberry mottle virus reveals extensive intra-species diversity and a longer RNA2 with increased coding capacity compared to a previously characterized European isolate.
测序草莓种质资源揭示了新的病毒遗传多样性和新的 RT-qPCR 检测方法的基础。
Viruses. 2021 Jul 24;13(8):1442. doi: 10.3390/v13081442.
对五株加拿大草莓斑驳病毒分离株的基因组序列分析表明,与之前鉴定的一株欧洲分离株相比,该病毒存在广泛的种内多样性,且RNA2更长,编码能力增强。
Arch Virol. 2016 Jun;161(6):1657-63. doi: 10.1007/s00705-016-2799-6. Epub 2016 Mar 17.
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Secoviridae: a proposed family of plant viruses within the order Picornavirales that combines the families Sequiviridae and Comoviridae, the unassigned genera Cheravirus and Sadwavirus, and the proposed genus Torradovirus.番茄病毒科:在小RNA病毒目内提议设立的一个植物病毒科,它合并了帚状病毒科和豇豆花叶病毒科、未归类的樱桃病毒属和萨德瓦病毒属,以及提议设立的番茄环斑病毒属。
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Multiplex RT-PCR detection of four aphid-borne strawberry viruses in Fragaria spp. in combination with a plant mRNA specific internal control.多重RT-PCR结合植物mRNA特异性内参检测草莓属植物中四种蚜虫传播的草莓病毒。
J Virol Methods. 2003 Aug;111(2):85-93. doi: 10.1016/s0166-0934(03)00164-2.
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