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计算机药物重定位:从大规模转录组数据到治疗学。

In silico drug repositioning: from large-scale transcriptome data to therapeutics.

机构信息

Research Institute of Pharmaceutical Sciences, Seoul National University, Seoul, 08826, Republic of Korea.

College of Pharmacy, Seoul National University, Seoul, 08826, Republic of Korea.

出版信息

Arch Pharm Res. 2019 Oct;42(10):879-889. doi: 10.1007/s12272-019-01176-3. Epub 2019 Sep 3.

DOI:10.1007/s12272-019-01176-3
PMID:31482491
Abstract

Drug repositioning is an attractive alternative to conventional drug development when new beneficial effects of old drugs are clinically validated because pharmacokinetic and safety profiles are generally already available. Since ~ 30% of drugs newly approved by the US food and drug administration (FDA) are developed through drug repositioning, identifying novel usage for existing drugs is an emerging strategy for developing disease treatments. With advances in next-generation sequencing technologies, available transcriptome data related to diseases have expanded rapidly. Harnessing these resources enables a better understanding of disease mechanisms and drug mode of action (MOA), and moves toward personalized pharmacotherapy. In this review, we briefly outline publicly available large-scale transcriptome databases and tools for drug repositioning. We also highlight recent approaches leading to the discovery of novel drug targets, drug response biomarkers, drug indications, and drug MOA.

摘要

药物重定位是一种有吸引力的替代传统药物开发的方法,当旧药物的新的有益效果在临床上得到验证时,因为药代动力学和安全性概况通常已经可用。由于美国食品和药物管理局 (FDA) 批准的新药约有 30%是通过药物重定位开发的,因此为现有药物确定新的用途是开发疾病治疗方法的一种新兴策略。随着下一代测序技术的进步,与疾病相关的可用转录组数据迅速增加。利用这些资源可以更好地了解疾病机制和药物作用模式 (MOA),并朝着个性化药物治疗的方向发展。在这篇综述中,我们简要概述了可公开获得的大规模转录组数据库和药物重定位工具。我们还强调了最近发现新的药物靶点、药物反应生物标志物、药物适应症和药物作用模式的方法。

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1
In silico drug repositioning: from large-scale transcriptome data to therapeutics.计算机药物重定位:从大规模转录组数据到治疗学。
Arch Pharm Res. 2019 Oct;42(10):879-889. doi: 10.1007/s12272-019-01176-3. Epub 2019 Sep 3.
2
Predicting new indications for approved drugs using a proteochemometric method.利用蛋白组化学计量学方法预测已批准药物的新适应症。
J Med Chem. 2012 Aug 9;55(15):6832-48. doi: 10.1021/jm300576q. Epub 2012 Jul 25.
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Computational and experimental advances in drug repositioning for accelerated therapeutic stratification.药物重新定位的计算和实验进展以加速治疗分层
Curr Top Med Chem. 2015;15(1):5-20. doi: 10.2174/1568026615666150112103510.
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In silico drug repositioning: what we need to know.计算机药物重定位:我们需要了解的内容。
Drug Discov Today. 2013 Feb;18(3-4):110-5. doi: 10.1016/j.drudis.2012.08.005. Epub 2012 Aug 28.
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Computational drug repositioning: from data to therapeutics.计算药物重定位:从数据到治疗。
Clin Pharmacol Ther. 2013 Apr;93(4):335-41. doi: 10.1038/clpt.2013.1. Epub 2013 Jan 15.
6
DrugMap Central: an on-line query and visualization tool to facilitate drug repositioning studies.DrugMap Central:一个在线查询和可视化工具,用于促进药物重定位研究。
Bioinformatics. 2013 Jul 15;29(14):1834-6. doi: 10.1093/bioinformatics/btt279. Epub 2013 May 15.
7
Transcriptomic-Guided Drug Repositioning Supported by a New Bioinformatics Search Tool: geneXpharma.转录组学指导的药物重定位得到新生物信息学搜索工具的支持:geneXpharma。
OMICS. 2017 Oct;21(10):584-591. doi: 10.1089/omi.2017.0127.
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Early repositioning through compound set enrichment analysis: a knowledge-recycling strategy.通过复合集富集分析进行早期重新定位:一种知识循环利用策略。
Future Med Chem. 2014 Apr;6(5):563-75. doi: 10.4155/fmc.14.4.
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PS4DR: a multimodal workflow for identification and prioritization of drugs based on pathway signatures.PS4DR:一种基于途径特征的药物识别和优先级排序的多模态工作流程。
BMC Bioinformatics. 2020 Jun 5;21(1):231. doi: 10.1186/s12859-020-03568-5.
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Toward better drug repositioning: prioritizing and integrating existing methods into efficient pipelines.迈向更好的药物重新定位:将现有方法进行优先级排序并整合到高效流程中。
Drug Discov Today. 2014 May;19(5):637-44. doi: 10.1016/j.drudis.2013.11.005. Epub 2013 Nov 14.

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